Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.23□□□□□ -2.21
USF1P22415 AC021231.3-201ENST00000558497 370 ntBASIC1.23□□□□□ -2.21
USF1P22415 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.23□□□□□ -2.21
USF1P22415 CYP4A27P-201ENST00000567218 190 ntBASIC1.23□□□□□ -2.21
USF1P22415 AGGF1P4-201ENST00000568249 801 ntBASIC1.23□□□□□ -2.21
USF1P22415 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.23□□□□□ -2.21
USF1P22415 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.23□□□□□ -2.21
USF1P22415 AL353770.2-201ENST00000620024 78 ntBASIC1.23□□□□□ -2.21
USF1P22415 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.23□□□□□ -2.21
USF1P22415 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
USF1P22415 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.22□□□□□ -2.21
USF1P22415 Y_RNA.118-201ENST00000363300 101 ntBASIC1.22□□□□□ -2.21
USF1P22415 SNORD31B-201ENST00000364977 69 ntBASIC1.22□□□□□ -2.21
USF1P22415 RNU6-378P-201ENST00000384324 107 ntBASIC1.22□□□□□ -2.21
USF1P22415 RNU6-296P-201ENST00000384608 107 ntBASIC1.22□□□□□ -2.21
USF1P22415 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.22□□□□□ -2.21
USF1P22415 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.22□□□□□ -2.21
USF1P22415 RPL21P111-201ENST00000418453 477 ntBASIC1.22□□□□□ -2.21
USF1P22415 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.22□□□□□ -2.21
USF1P22415 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.22□□□□□ -2.21
USF1P22415 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.22□□□□□ -2.21
USF1P22415 RNU7-14P-201ENST00000459331 62 ntBASIC1.22□□□□□ -2.21
USF1P22415 AC007547.1-201ENST00000462177 490 ntBASIC1.22□□□□□ -2.21
USF1P22415 AC008628.2-201ENST00000502605 298 ntBASIC1.22□□□□□ -2.21
USF1P22415 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.22□□□□□ -2.21
USF1P22415 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.22□□□□□ -2.21
USF1P22415 RNU6-1098P-201ENST00000516772 96 ntBASIC1.22□□□□□ -2.21
USF1P22415 SNORD60.2-201ENST00000516883 86 ntBASIC1.22□□□□□ -2.21
USF1P22415 AC012414.6-201ENST00000568241 401 ntBASIC1.22□□□□□ -2.21
USF1P22415 Z98751.3-201ENST00000604447 521 ntBASIC1.22□□□□□ -2.21
USF1P22415 AP001836.1-201ENST00000604675 523 ntBASIC1.22□□□□□ -2.21
USF1P22415 AP001596.2-201ENST00000608410 312 ntBASIC1.22□□□□□ -2.21
USF1P22415 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
USF1P22415 MIR7111-201ENST00000619751 72 ntBASIC1.22□□□□□ -2.21
USF1P22415 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.22□□□□□ -2.21
USF1P22415 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
USF1P22415 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
USF1P22415 RNU1-62P-201ENST00000362599 164 ntBASIC1.21□□□□□ -2.22
USF1P22415 RNU4-13P-201ENST00000364019 141 ntBASIC1.21□□□□□ -2.22
USF1P22415 Y_RNA.201-201ENST00000364052 96 ntBASIC1.21□□□□□ -2.22
USF1P22415 Y_RNA.504-201ENST00000384481 104 ntBASIC1.21□□□□□ -2.22
USF1P22415 MIR518E-201ENST00000385252 88 ntBASIC1.21□□□□□ -2.22
USF1P22415 SNORA12.2-201ENST00000391040 156 ntBASIC1.21□□□□□ -2.22
USF1P22415 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
USF1P22415 MIR1267-201ENST00000408723 78 ntBASIC1.21□□□□□ -2.22
USF1P22415 SNRPFP3-201ENST00000457792 225 ntBASIC1.21□□□□□ -2.22
USF1P22415 RNU7-167P-201ENST00000459160 62 ntBASIC1.21□□□□□ -2.22
USF1P22415 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.21□□□□□ -2.22
USF1P22415 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.21□□□□□ -2.22
USF1P22415 AL137161.1-201ENST00000532231 390 ntBASIC1.21□□□□□ -2.22
USF1P22415 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.21□□□□□ -2.22
USF1P22415 AC005520.5-201ENST00000613926 164 ntBASIC1.21□□□□□ -2.22
USF1P22415 AC072046.2-201ENST00000618366 268 ntBASIC1.21□□□□□ -2.22
USF1P22415 AL136221.1-201ENST00000621449 509 ntBASIC1.21□□□□□ -2.22
USF1P22415 AC068205.3-201ENST00000636385 468 ntBASIC1.21□□□□□ -2.22
USF1P22415 AL450472.1-202ENST00000637286 180 ntBASIC1.21□□□□□ -2.22
USF1P22415 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
USF1P22415 AL390237.1-201ENST00000404226 1415 ntBASIC1.21□□□□□ -2.22
USF1P22415 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
USF1P22415 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
USF1P22415 Y_RNA.116-201ENST00000363292 103 ntBASIC1.2□□□□□ -2.22
USF1P22415 Y_RNA.122-201ENST00000363331 96 ntBASIC1.2□□□□□ -2.22
USF1P22415 Y_RNA.224-201ENST00000364308 111 ntBASIC1.2□□□□□ -2.22
USF1P22415 Y_RNA.355-201ENST00000365462 98 ntBASIC1.2□□□□□ -2.22
USF1P22415 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.2□□□□□ -2.22
USF1P22415 MIR320A-201ENST00000385302 82 ntBASIC1.2□□□□□ -2.22
USF1P22415 RNU6-360P-201ENST00000390944 104 ntBASIC1.2□□□□□ -2.22
USF1P22415 MIR1276-201ENST00000408707 83 ntBASIC1.2□□□□□ -2.22
USF1P22415 RNU2-9P-201ENST00000410194 145 ntBASIC1.2□□□□□ -2.22
USF1P22415 EBAG9P1-201ENST00000418955 543 ntBASIC1.2□□□□□ -2.22
USF1P22415 MTCO2P34-201ENST00000421994 607 ntBASIC1.2□□□□□ -2.22
USF1P22415 FTH1P12-201ENST00000432137 551 ntBASIC1.2□□□□□ -2.22
USF1P22415 AL445567.1-201ENST00000439121 144 ntBASIC1.2□□□□□ -2.22
USF1P22415 SNRPGP13-201ENST00000442212 177 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC244505.5-201ENST00000443639 207 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC245517.4-201ENST00000448601 281 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC132479.1-201ENST00000449160 144 ntBASIC1.2□□□□□ -2.22
USF1P22415 HSPE1P24-201ENST00000450782 238 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC007395.1-201ENST00000451333 677 ntBASIC1.2□□□□□ -2.22
USF1P22415 AL356010.1-201ENST00000456364 102 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC016925.1-201ENST00000458303 298 ntBASIC1.2□□□□□ -2.22
USF1P22415 RPL26P26-201ENST00000480251 434 ntBASIC1.2□□□□□ -2.22
USF1P22415 HMGN1P7-201ENST00000491722 313 ntBASIC1.2□□□□□ -2.22
USF1P22415 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.2□□□□□ -2.22
USF1P22415 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.2□□□□□ -2.22
USF1P22415 MTCYBP35-201ENST00000503630 1137 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC091874.1-201ENST00000511402 339 ntBASIC1.2□□□□□ -2.22
USF1P22415 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.2□□□□□ -2.22
USF1P22415 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.2□□□□□ -2.22
USF1P22415 AP003034.1-201ENST00000534621 422 ntBASIC1.2□□□□□ -2.22
USF1P22415 SUB1P2-201ENST00000556401 297 ntBASIC1.2□□□□□ -2.22
USF1P22415 HMGB1P33-201ENST00000563485 527 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.2□□□□□ -2.22
USF1P22415 SNORA77B-201ENST00000578179 125 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC068790.2-201ENST00000602601 557 ntBASIC1.2□□□□□ -2.22
USF1P22415 Z94722.1-201ENST00000604328 474 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC009994.1-201ENST00000606889 253 ntBASIC1.2□□□□□ -2.22
USF1P22415 AC064807.4-201ENST00000607201 407 ntBASIC1.2□□□□□ -2.22
USF1P22415 MIR6078-201ENST00000611069 100 ntBASIC1.2□□□□□ -2.22
USF1P22415 U2.17-201ENST00000611454 95 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 130 ms