Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU6-1188P-201ENST00000363795 107 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 RNU6-933P-201ENST00000384424 107 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 MIR147B-201ENST00000390185 80 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 Y_RNA.594-201ENST00000410373 140 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXD4P09016 Z82205.1-201ENST00000428456 297 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 MTND3P9-201ENST00000429526 346 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 AC007969.2-201ENST00000441891 191 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXD4P09016 AL441985.1-201ENST00000457727 251 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 SNORD5.1-201ENST00000458800 75 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 U8.21-201ENST00000459536 136 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 SNORD19B-201ENST00000459623 84 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXD4P09016 Y_RNA.670-201ENST00000516255 105 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXD4P09016 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXD4P09016 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXD4P09016 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXD4P09016 VN1R107P-201ENST00000601784 209 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 AP000654.2-201ENST00000605633 586 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 HMGB1P24-202ENST00000615653 685 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 AC098657.3-201ENST00000620434 263 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 MIR6873-201ENST00000622788 63 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 AC241585.2-209ENST00000638217 143 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXD4P09016 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXD4P09016 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
HOXD4P09016 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXD4P09016 AL109809.4-201ENST00000603520 2185 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXD4P09016 RNU6-486P-201ENST00000363116 107 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 Y_RNA.259-201ENST00000364619 101 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 RNU6-487P-201ENST00000365430 104 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 RNU6-842P-201ENST00000384269 107 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 RNU6-622P-201ENST00000384272 103 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 MIR521-1-201ENST00000384902 87 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 RNY4P36-201ENST00000391116 96 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 U6atac.2-201ENST00000408644 118 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 RNU6-1050P-201ENST00000410388 107 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXD4P09016 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXD4P09016 DAP3P1-201ENST00000441522 278 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXD4P09016 AP001324.2-201ENST00000461163 319 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 RPS29P27-201ENST00000463711 170 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 RPL7P42-201ENST00000481005 679 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 RNA5SP112-201ENST00000515937 99 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 Y_RNA.708-201ENST00000516950 96 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 Y_RNA.718-201ENST00000517110 102 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXD4P09016 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXD4P09016 MIR4765-201ENST00000585007 77 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 AC011494.1-201ENST00000596454 237 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 AC025754.2-201ENST00000606491 432 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 AL050343.2-201ENST00000607338 280 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 AC009229.3-201ENST00000608056 282 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 AL669831.3-213ENST00000636676 183 ntBASIC2.07□□□□□ -2.08
HOXD4P09016 HAUS6P2-201ENST00000433254 2404 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 RNU6-694P-201ENST00000364071 147 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 Y_RNA.404-201ENST00000383978 102 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 Y_RNA.419-201ENST00000384041 102 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
HOXD4P09016 MIR764-201ENST00000390811 85 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 SNORA75.4-201ENST00000391278 119 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 AF228730.4-201ENST00000421457 183 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXD4P09016 AC012308.1-201ENST00000451232 178 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXD4P09016 MIR514B-201ENST00000516774 80 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.06□□□□□ -2.08
HOXD4P09016 AP005902.1-201ENST00000521358 186 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXD4P09016 AC109446.1-201ENST00000566172 220 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 MIR5571-201ENST00000577998 113 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 AC090897.2-201ENST00000581715 130 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 MIR4658-201ENST00000584344 65 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 AC002984.1-201ENST00000591692 448 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 AP001836.1-201ENST00000604675 523 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 AC069294.1-201ENST00000608397 350 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXD4P09016 AC024581.2-201ENST00000619986 252 ntBASIC2.06□□□□□ -2.08
HOXD4P09016 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.06□□□□□ -2.08
HOXD4P09016 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXD4P09016 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
HOXD4P09016 MTND5P6-201ENST00000422338 1798 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AC069528.2-201ENST00000624849 1991 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
HOXD4P09016 Y_RNA.11-201ENST00000362375 109 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 RNU6-227P-201ENST00000362865 103 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 SNORA38-201ENST00000363946 132 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 Y_RNA.813-201ENST00000364639 102 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 RNU6-310P-201ENST00000384655 107 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 MIR544A-201ENST00000384855 91 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 AL079342.1-201ENST00000401460 267 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 MTCYBP4-201ENST00000401524 249 ntBASIC2.05□□□□□ -2.08
HOXD4P09016 Y_RNA.646-201ENST00000410980 101 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms