Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RNU6-37P-201ENST00000362692 107 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU6-11P-201ENST00000364234 107 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU4-56P-201ENST00000364700 142 ntBASIC0.66□□□□□ -2.3
APOEP02649 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
APOEP02649 RNU6-25P-201ENST00000383873 107 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU6-418P-201ENST00000384035 107 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU6-48P-201ENST00000384161 107 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU6-16P-201ENST00000384385 107 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU6-1026P-201ENST00000384465 108 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU6-15P-201ENST00000384534 107 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU6-29P-201ENST00000384637 107 ntBASIC0.66□□□□□ -2.3
APOEP02649 MIR608-201ENST00000384820 100 ntBASIC0.66□□□□□ -2.3
APOEP02649 MIR605-201ENST00000385078 83 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU6-733P-201ENST00000410759 104 ntBASIC0.66□□□□□ -2.3
APOEP02649 RNU6-607P-201ENST00000411283 108 ntBASIC0.66□□□□□ -2.3
APOEP02649 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.66□□□□□ -2.3
APOEP02649 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.66□□□□□ -2.3
APOEP02649 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC0.66□□□□□ -2.3
APOEP02649 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.66□□□□□ -2.3
APOEP02649 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.66□□□□□ -2.3
APOEP02649 AC007547.1-201ENST00000462177 490 ntBASIC0.66□□□□□ -2.3
APOEP02649 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.66□□□□□ -2.3
APOEP02649 HSPE1P23-201ENST00000509838 286 ntBASIC0.66□□□□□ -2.3
APOEP02649 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC0.66□□□□□ -2.3
APOEP02649 RNU6-377P-201ENST00000515965 102 ntBASIC0.66□□□□□ -2.3
APOEP02649 AC136628.3-201ENST00000521868 290 ntBASIC0.66□□□□□ -2.3
APOEP02649 MTCO2P2-201ENST00000591258 225 ntBASIC0.66□□□□□ -2.3
APOEP02649 AC105129.3-201ENST00000605455 485 ntBASIC0.66□□□□□ -2.3
APOEP02649 AL138960.2-201ENST00000625145 535 ntBASIC0.66□□□□□ -2.3
APOEP02649 Y_RNA.124-201ENST00000363339 93 ntBASIC0.65□□□□□ -2.31
APOEP02649 Y_RNA.132-201ENST00000363421 102 ntBASIC0.65□□□□□ -2.31
APOEP02649 RNU4-1-201ENST00000363925 141 ntBASIC0.65□□□□□ -2.31
APOEP02649 RNU6-61P-201ENST00000365528 109 ntBASIC0.65□□□□□ -2.31
APOEP02649 RNU6-1000P-201ENST00000391066 106 ntBASIC0.65□□□□□ -2.31
APOEP02649 MTCYBP36-201ENST00000404146 440 ntBASIC0.65□□□□□ -2.31
APOEP02649 RNU2-39P-201ENST00000410604 198 ntBASIC0.65□□□□□ -2.31
APOEP02649 AC011233.1-201ENST00000422812 283 ntBASIC0.65□□□□□ -2.31
APOEP02649 AC002429.1-201ENST00000437672 148 ntBASIC0.65□□□□□ -2.31
APOEP02649 GTF2IP13-201ENST00000438487 386 ntBASIC0.65□□□□□ -2.31
APOEP02649 C1DP4-201ENST00000455429 424 ntBASIC0.65□□□□□ -2.31
APOEP02649 AC048334.1-201ENST00000477975 159 ntBASIC0.65□□□□□ -2.31
APOEP02649 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.65□□□□□ -2.31
APOEP02649 RNU6-322P-201ENST00000516010 103 ntBASIC0.65□□□□□ -2.31
APOEP02649 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.65□□□□□ -2.31
APOEP02649 AC016957.1-201ENST00000534895 309 ntBASIC0.65□□□□□ -2.31
APOEP02649 CYP4A27P-201ENST00000567218 190 ntBASIC0.65□□□□□ -2.31
APOEP02649 AC097478.2-201ENST00000610572 514 ntBASIC0.65□□□□□ -2.31
APOEP02649 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.65□□□□□ -2.31
APOEP02649 RMST_2.1-201ENST00000617263 136 ntBASIC0.65□□□□□ -2.31
APOEP02649 MIR338-201ENST00000636369 67 ntBASIC0.65□□□□□ -2.31
APOEP02649 RNU6-1123P-201ENST00000362347 106 ntBASIC0.64□□□□□ -2.31
APOEP02649 RNU4-79P-201ENST00000362764 141 ntBASIC0.64□□□□□ -2.31
APOEP02649 RNU1-76P-201ENST00000362903 159 ntBASIC0.64□□□□□ -2.31
APOEP02649 RNU5E-10P-201ENST00000363506 118 ntBASIC0.64□□□□□ -2.31
APOEP02649 Y_RNA.269-201ENST00000364685 89 ntBASIC0.64□□□□□ -2.31
APOEP02649 RNU6-336P-201ENST00000364891 107 ntBASIC0.64□□□□□ -2.31
APOEP02649 Y_RNA.302-201ENST00000364997 102 ntBASIC0.64□□□□□ -2.31
APOEP02649 SNORD114-24-201ENST00000365029 72 ntBASIC0.64□□□□□ -2.31
APOEP02649 RNU6-1242P-201ENST00000391052 103 ntBASIC0.64□□□□□ -2.31
APOEP02649 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.64□□□□□ -2.31
APOEP02649 AC063976.4-201ENST00000421971 163 ntBASIC0.64□□□□□ -2.31
APOEP02649 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.64□□□□□ -2.31
APOEP02649 RAB28P5-201ENST00000427490 651 ntBASIC0.64□□□□□ -2.31
APOEP02649 MTND1P20-201ENST00000430341 950 ntBASIC0.64□□□□□ -2.31
APOEP02649 RPL39P38-201ENST00000467018 153 ntBASIC0.64□□□□□ -2.31
APOEP02649 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.64□□□□□ -2.31
APOEP02649 AC117522.1-201ENST00000509821 380 ntBASIC0.64□□□□□ -2.31
APOEP02649 AC090142.3-201ENST00000519012 385 ntBASIC0.64□□□□□ -2.31
APOEP02649 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.64□□□□□ -2.31
APOEP02649 EIF4A1P12-201ENST00000551910 141 ntBASIC0.64□□□□□ -2.31
APOEP02649 AC004817.2-201ENST00000561794 651 ntBASIC0.64□□□□□ -2.31
APOEP02649 AC019226.2-201ENST00000625973 424 ntBASIC0.64□□□□□ -2.31
APOEP02649 AC013437.2-201ENST00000639587 677 ntBASIC0.64□□□□□ -2.31
APOEP02649 RNU6-545P-201ENST00000362681 104 ntBASIC0.63□□□□□ -2.31
APOEP02649 RNU6-428P-201ENST00000362942 107 ntBASIC0.63□□□□□ -2.31
APOEP02649 RNU4-68P-201ENST00000364314 141 ntBASIC0.63□□□□□ -2.31
APOEP02649 SNORD32A-201ENST00000364805 84 ntBASIC0.63□□□□□ -2.31
APOEP02649 RNU6-534P-201ENST00000364877 106 ntBASIC0.63□□□□□ -2.31
APOEP02649 RNU6-641P-201ENST00000384006 107 ntBASIC0.63□□□□□ -2.31
APOEP02649 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.63□□□□□ -2.31
APOEP02649 HMGN1P12-201ENST00000499125 195 ntBASIC0.63□□□□□ -2.31
APOEP02649 AC010587.1-201ENST00000505809 469 ntBASIC0.63□□□□□ -2.31
APOEP02649 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.63□□□□□ -2.31
APOEP02649 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.63□□□□□ -2.31
APOEP02649 TPRKBP2-201ENST00000565969 475 ntBASIC0.63□□□□□ -2.31
APOEP02649 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.63□□□□□ -2.31
APOEP02649 AC022432.1-201ENST00000595739 310 ntBASIC0.63□□□□□ -2.31
APOEP02649 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.63□□□□□ -2.31
APOEP02649 AL353149.1-201ENST00000610667 244 ntBASIC0.63□□□□□ -2.31
APOEP02649 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.63□□□□□ -2.31
APOEP02649 AL139418.1-201ENST00000613613 177 ntBASIC0.63□□□□□ -2.31
APOEP02649 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
APOEP02649 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
APOEP02649 MIR558-201ENST00000384920 94 ntBASIC0.62□□□□□ -2.31
APOEP02649 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.62□□□□□ -2.31
APOEP02649 RPS26P5-201ENST00000418544 335 ntBASIC0.62□□□□□ -2.31
APOEP02649 RPL23AP95-201ENST00000426806 265 ntBASIC0.62□□□□□ -2.31
APOEP02649 AC078809.1-201ENST00000427601 140 ntBASIC0.62□□□□□ -2.31
APOEP02649 AC119618.1-201ENST00000434191 222 ntBASIC0.62□□□□□ -2.31
APOEP02649 RPL37P21-201ENST00000435890 276 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms