Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU6-927P-201ENST00000516199 100 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 MTND2P7-201ENST00000521337 640 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 AC007751.1-201ENST00000529260 376 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 BNIP3P24-201ENST00000593398 557 ntBASIC-0.59□□□□□ -2.5
CCDC88BA6NC98 SNORA1.1-201ENST00000364671 133 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 RNU6-637P-201ENST00000384050 107 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 AC002486.1-201ENST00000435098 391 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 RPL37P6-201ENST00000460682 294 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 AC010469.2-201ENST00000496412 480 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 AC027338.1-201ENST00000514840 825 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 RNU1-86P-201ENST00000516108 154 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 RNU1-107P-201ENST00000516617 154 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 AC105185.1-201ENST00000518705 535 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 AF235103.2-201ENST00000525753 346 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 SNORA59B-202ENST00000578183 701 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 AL596245.1-201ENST00000618994 362 ntBASIC-0.6□□□□□ -2.5
CCDC88BA6NC98 MIR340-201ENST00000362125 95 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 RNU6-438P-201ENST00000365561 103 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AC027644.1-201ENST00000419595 298 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AC060773.1-201ENST00000421698 310 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 USP9YP22-201ENST00000438971 294 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 RPL18AP17-201ENST00000455326 198 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 MTCO2P18-201ENST00000457151 658 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 TPRKBP2-201ENST00000565969 475 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AC019226.1-201ENST00000625666 515 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AC119674.1-220ENST00000641502 1048 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 MTND4P21-201ENST00000453886 1357 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 RNU6-212P-201ENST00000362642 104 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 RNA5SP517-201ENST00000364724 117 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 MTCO3P41-201ENST00000414801 328 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 MTATP6P16-201ENST00000434543 526 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 RPL7P55-201ENST00000450522 746 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 FABP5P15-201ENST00000453566 214 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 MED28P2-201ENST00000475771 317 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 RNU6-1041P-201ENST00000516254 102 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AC009712.1-201ENST00000564938 316 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 AC092325.1-201ENST00000566449 554 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 MIR4300-201ENST00000581016 96 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 uc_338.36-201ENST00000622331 158 ntBASIC-0.61□□□□□ -2.51
CCDC88BA6NC98 MTND4P5-201ENST00000435821 1374 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 MIR18A-201ENST00000362310 71 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 Y_RNA.548-201ENST00000384656 105 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 MED13P1-201ENST00000428342 171 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 AC003071.1-201ENST00000451219 789 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 RNU6-416P-201ENST00000516265 103 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 SNORA76.2-201ENST00000517095 137 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 HIGD1AP17-201ENST00000554576 276 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 AC093519.1-201ENST00000566109 298 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 AC122134.1-202ENST00000569111 1201 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 AL929325.1-201ENST00000603096 117 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 AC092447.9-201ENST00000603395 144 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 AC015726.2-201ENST00000620112 122 ntBASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC-0.62□□□□□ -2.51
CCDC88BA6NC98 RNU6-1078P-201ENST00000364522 103 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 RNY3P5-201ENST00000384127 102 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 RNU6-1300P-201ENST00000391046 108 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 RAC1P6-201ENST00000423911 575 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 AC010154.1-201ENST00000425857 269 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 OFD1P4Y-201ENST00000455273 1179 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 RBBP4P6-201ENST00000508098 202 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 AC025465.4-201ENST00000513422 638 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 RNU6-572P-201ENST00000516724 80 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 AF038458.1-201ENST00000588406 262 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 AC025449.1-201ENST00000603896 529 ntBASIC-0.63□□□□□ -2.51
CCDC88BA6NC98 SNORD14C-201ENST00000365382 88 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 RNU6-505P-201ENST00000384427 107 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 MTATP6P27-201ENST00000416987 621 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 MTCYBP10-201ENST00000424905 650 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 ISCA1P1-201ENST00000426679 387 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 LARP1BP3-201ENST00000437229 869 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 snoU13.21-201ENST00000459368 105 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 AC013828.1-201ENST00000481845 158 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 AC114811.1-201ENST00000507207 168 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 AC074133.1-201ENST00000515696 183 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 U6.101-201ENST00000637707 76 ntBASIC-0.64□□□□□ -2.51
CCDC88BA6NC98 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC-0.65□□□□□ -2.51
CCDC88BA6NC98 RNU1-117P-201ENST00000517041 158 ntBASIC-0.65□□□□□ -2.51
CCDC88BA6NC98 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.65□□□□□ -2.51
CCDC88BA6NC98 AC136618.2-201ENST00000575091 400 ntBASIC-0.65□□□□□ -2.51
CCDC88BA6NC98 MTND3P19-201ENST00000603825 345 ntBASIC-0.65□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms