Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL162274.2-201ENST00000614406 332 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 MAPK10-266ENST00000641066 6555 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 SNORA63C-201ENST00000364578 129 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 SNORD21-201ENST00000383953 95 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 SNORA69.1-201ENST00000390904 137 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 AL138827.1-201ENST00000402666 306 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 MTND2P23-201ENST00000422990 651 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 RPL30P1-201ENST00000488676 339 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 AC021146.2-201ENST00000504736 556 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 RAC1P5-201ENST00000512182 576 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 SNORA40.14-201ENST00000516543 86 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 RNU4-77P-201ENST00000516692 156 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-1198P-201ENST00000516904 67 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 MIR2355-201ENST00000517199 87 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 Y_RNA.721-201ENST00000517207 102 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 MIR4325-201ENST00000583049 90 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 AC073410.2-201ENST00000603240 332 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 AC016727.2-201ENST00000603988 621 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 MIR1244-1-201ENST00000612829 85 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 MIR1244-3-201ENST00000635744 85 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 MIR1244-2-201ENST00000636449 85 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 MIR1244-4-202ENST00000636813 85 ntBASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
LIMCH1Q9UPQ0 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AC009487.2-201ENST00000420969 6821 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-212P-201ENST00000362642 104 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-529P-201ENST00000363383 104 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 RNU4-42P-201ENST00000364738 142 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-17P-201ENST00000384245 107 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-18P-201ENST00000384527 107 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 MIR592-201ENST00000384959 97 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 MIR153-2-201ENST00000385225 87 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AC097463.2-201ENST00000421074 142 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AL590135.1-201ENST00000422215 156 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AC019205.3-201ENST00000424573 156 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AL160004.2-201ENST00000432935 350 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AC016700.2-201ENST00000446011 156 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AC087477.1-201ENST00000465747 340 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 S100A11P2-201ENST00000467589 312 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 RPL31P41-201ENST00000477967 372 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 SEM1P1-201ENST00000506694 209 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 RNA5SP112-201ENST00000515937 99 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AC022080.3-201ENST00000544433 482 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 VN1R91P-201ENST00000594377 169 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 MIR4272-201ENST00000635924 64 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AL450472.1-202ENST00000637286 180 ntBASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.18□□□□□ -1.9
LIMCH1Q9UPQ0 OR56A5-201ENST00000340110 738 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-137P-201ENST00000363680 108 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 RNU1-112P-201ENST00000364401 164 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 RNU1-57P-201ENST00000384491 166 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 Y_RNA.526-201ENST00000384572 110 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-1140P-201ENST00000410517 106 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 MTCO3P19-201ENST00000415864 321 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 AC012306.1-201ENST00000423267 114 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 RPS29P12-201ENST00000460178 152 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 RPS27AP9-201ENST00000477681 438 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 RN7SL499P-201ENST00000481141 276 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 AF186996.7-201ENST00000492781 209 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 MRPS36P2-201ENST00000512569 299 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 MIR4765-201ENST00000585007 77 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 AC011471.1-201ENST00000585766 187 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 AC010928.2-201ENST00000588017 287 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 AL138963.2-201ENST00000605137 226 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 AC116312.1-201ENST00000606841 314 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 AC087588.2-201ENST00000617667 426 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
LIMCH1Q9UPQ0 MTND4P1-201ENST00000457501 1466 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 U3.13-201ENST00000364804 214 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 Y_RNA.424-201ENST00000384063 103 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 SNORA44-201ENST00000384584 132 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 MIR186-201ENST00000384988 86 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-985P-201ENST00000410182 104 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 RNA5SP21-201ENST00000410917 96 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 RPS26P42-201ENST00000413485 326 ntBASIC3.16□□□□□ -1.9
LIMCH1Q9UPQ0 MTCO3P29-201ENST00000432119 779 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms