Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.157-201ENST00000363638 102 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 RNU6-234P-201ENST00000365229 104 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 RNU6-378P-201ENST00000384324 107 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 MIR521-1-201ENST00000384902 87 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
VPS28Q9UK41 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS28Q9UK41 AC104435.1-201ENST00000483483 166 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS28Q9UK41 MIR449C-201ENST00000516047 92 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 RNU6-256P-201ENST00000516747 97 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS28Q9UK41 AC146944.4-201ENST00000602697 718 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
VPS28Q9UK41 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS28Q9UK41 AC073869.6-201ENST00000640656 341 ntBASIC2.31□□□□□ -2.04
VPS28Q9UK41 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
VPS28Q9UK41 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
VPS28Q9UK41 SNORA70B-201ENST00000384210 135 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 MIR221-201ENST00000385135 110 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 MIR548F1-201ENST00000408667 84 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.3□□□□□ -2.04
VPS28Q9UK41 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS28Q9UK41 AC018634.1-201ENST00000437554 401 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS28Q9UK41 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS28Q9UK41 MTCYBP18-201ENST00000501056 747 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS28Q9UK41 RNA5SP490-201ENST00000517141 136 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS28Q9UK41 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS28Q9UK41 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
VPS28Q9UK41 MIR5694-201ENST00000581190 76 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 AC068790.6-201ENST00000602558 258 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 AL133215.3-201ENST00000609801 448 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 MIR6840-201ENST00000611937 71 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 AC090617.10-201ENST00000624308 134 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 MIR3662-201ENST00000637030 95 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 MTND5P6-201ENST00000422338 1798 ntBASIC2.3□□□□□ -2.04
VPS28Q9UK41 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.29□□□□□ -2.04
VPS28Q9UK41 RNU6-1286P-201ENST00000383871 107 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 RNA5SP465-201ENST00000391195 109 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 RNA5SP450-201ENST00000411206 102 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS28Q9UK41 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS28Q9UK41 RNU7-187P-201ENST00000458985 68 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS28Q9UK41 AC005741.1-201ENST00000511094 432 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS28Q9UK41 AP000889.2-201ENST00000532684 490 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS28Q9UK41 AC009994.1-201ENST00000606889 253 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 AL138726.1-201ENST00000614873 333 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.29□□□□□ -2.04
VPS28Q9UK41 AC131280.1-202ENST00000624067 4211 ntBASIC2.29□□□□□ -2.04
VPS28Q9UK41 AL596028.1-201ENST00000326971 197 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 MIRLET7G-201ENST00000362280 84 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 RNU6-968P-201ENST00000384076 107 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 SNORA29-201ENST00000384183 140 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 RNU6-790P-201ENST00000384479 105 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 MIR17-201ENST00000385012 84 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 RN7SKP223-201ENST00000410582 62 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 RN7SKP192-201ENST00000411291 327 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 MTND1P23-201ENST00000416931 372 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 OOSP1P1-201ENST00000423265 274 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.28□□□□□ -2.04
VPS28Q9UK41 AL139415.2-201ENST00000431968 163 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS28Q9UK41 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
VPS28Q9UK41 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS28Q9UK41 RNU6-718P-201ENST00000516166 105 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 SNRPGP18-201ENST00000553000 214 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 AC026464.5-201ENST00000562497 722 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.28□□□□□ -2.04
VPS28Q9UK41 MIR1273D-201ENST00000577266 86 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS28Q9UK41 FGF7P1-201ENST00000582820 288 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 RPL17P51-201ENST00000605218 238 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS28Q9UK41 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
VPS28Q9UK41 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.28□□□□□ -2.04
VPS28Q9UK41 MIR6132-201ENST00000622083 109 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 AC009033.1-201ENST00000624279 431 ntBASIC2.28□□□□□ -2.04
VPS28Q9UK41 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
VPS28Q9UK41 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
VPS28Q9UK41 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
VPS28Q9UK41 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.05
VPS28Q9UK41 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
VPS28Q9UK41 AC008555.8-201ENST00000623602 2168 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 RNU6-562P-201ENST00000362731 107 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 Y_RNA.135-201ENST00000363439 95 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 RNU6-95P-201ENST00000384697 107 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 MIR1277-201ENST00000408536 78 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 DPH3P2-201ENST00000422618 250 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 AL513185.2-201ENST00000425543 193 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 WARS2P1-201ENST00000429678 537 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 FTH1P25-201ENST00000447665 469 ntBASIC2.27□□□□□ -2.05
VPS28Q9UK41 HMGN2P18-201ENST00000450680 270 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms