Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.86□□□□□ -1.79
DDX41Q9UJV9 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
DDX41Q9UJV9 AL356575.1-201ENST00000603008 283 ntBASIC3.86□□□□□ -1.79
DDX41Q9UJV9 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.86□□□□□ -1.79
DDX41Q9UJV9 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.86□□□□□ -1.79
DDX41Q9UJV9 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.86□□□□□ -1.79
DDX41Q9UJV9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.86□□□□□ -1.79
DDX41Q9UJV9 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
DDX41Q9UJV9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
DDX41Q9UJV9 GABRG2-229ENST00000641017 3628 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 Y_RNA.512-201ENST00000384518 102 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 MIR10B-201ENST00000385011 110 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.85□□□□□ -1.79
DDX41Q9UJV9 AIMP1P2-201ENST00000425294 312 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.85□□□□□ -1.79
DDX41Q9UJV9 AP000705.1-201ENST00000454567 350 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.85□□□□□ -1.79
DDX41Q9UJV9 SNORA59A-201ENST00000459326 152 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 RNU6-1012P-201ENST00000516606 109 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 MIR4659A-201ENST00000580269 81 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 AC125232.2-201ENST00000592457 143 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.85□□□□□ -1.79
DDX41Q9UJV9 AC005520.5-201ENST00000613926 164 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 AC240442.1-201ENST00000616055 283 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 MIR8057-201ENST00000620957 69 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 SNORA50A-202ENST00000629536 136 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.85□□□□□ -1.79
DDX41Q9UJV9 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
DDX41Q9UJV9 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.85□□□□□ -1.79
DDX41Q9UJV9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
DDX41Q9UJV9 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.84□□□□□ -1.79
DDX41Q9UJV9 Y_RNA.40-201ENST00000362645 93 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 SNORA38.1-201ENST00000364172 131 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 Y_RNA.288-201ENST00000364854 92 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
DDX41Q9UJV9 CBX3P9-201ENST00000402326 552 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 Z75741.1-201ENST00000446793 314 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 HMGN1P18-201ENST00000457642 277 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 AL121594.1-201ENST00000475906 575 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 RAC1P5-201ENST00000512182 576 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 RNU2-53P-201ENST00000516257 147 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 RN7SKP49-201ENST00000516675 260 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 AC026241.1-201ENST00000517873 2142 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.84□□□□□ -1.79
DDX41Q9UJV9 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.84□□□□□ -1.79
DDX41Q9UJV9 UBL5P4-201ENST00000562584 236 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 SNRPGP20-201ENST00000604477 205 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 AL670379.2-201ENST00000604983 252 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.84□□□□□ -1.79
DDX41Q9UJV9 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.84□□□□□ -1.79
DDX41Q9UJV9 Z83843.1-201ENST00000604070 3685 ntBASIC3.84□□□□□ -1.8
DDX41Q9UJV9 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 RNU6-281P-201ENST00000384212 103 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 Y_RNA.461-201ENST00000384263 103 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 RNU6-505P-201ENST00000384427 107 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 SNORA48.2-201ENST00000390926 124 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 RNA5SP213-201ENST00000391031 106 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 SNORA48.8-201ENST00000391324 134 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 RPS3P1-201ENST00000456781 192 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 AC007215.1-201ENST00000464893 276 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 RPS29P2-201ENST00000479278 136 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 AC110588.1-201ENST00000559699 137 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 MIR4276-201ENST00000584832 70 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 AC078899.3-201ENST00000599065 212 ntBASIC3.83□□□□□ -1.8
DDX41Q9UJV9 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.83□□□□□ -1.8
DDX41Q9UJV9 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
DDX41Q9UJV9 MAPK10-322ENST00000641485 4530 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 Y_RNA.64-201ENST00000362845 102 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 Y_RNA.188-201ENST00000363952 111 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 RNU6-318P-201ENST00000384283 103 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 MIR487A-201ENST00000385009 80 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
DDX41Q9UJV9 SNORD12B-201ENST00000410433 91 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.82□□□□□ -1.8
DDX41Q9UJV9 AC112220.1-201ENST00000434628 355 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.82□□□□□ -1.8
DDX41Q9UJV9 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.82□□□□□ -1.8
DDX41Q9UJV9 RN7SL283P-201ENST00000489055 303 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 MRPS36P2-201ENST00000512569 299 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 AP003733.2-201ENST00000529409 171 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 AC027176.1-201ENST00000560204 514 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 MIR5680-201ENST00000577577 84 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 AL133393.1-201ENST00000603277 287 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
DDX41Q9UJV9 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
DDX41Q9UJV9 ZNF204P-201ENST00000416749 2397 ntBASIC3.82□□□□□ -1.8
DDX41Q9UJV9 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
DDX41Q9UJV9 BX322639.1-202ENST00000423987 2213 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms