Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 C8orf59P1-201ENST00000429930 303 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 RPS27P21-201ENST00000486977 252 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AC093259.1-201ENST00000509755 300 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.85□□□□□ -2.11
LHX3Q9UBR4 SNORD60.2-201ENST00000516883 86 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.85□□□□□ -2.11
LHX3Q9UBR4 MIR4287-201ENST00000579398 78 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AC068944.2-201ENST00000610373 403 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
LHX3Q9UBR4 MIR6715A-201ENST00000615929 79 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AL162373.1-201ENST00000620433 407 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 DUXAP9-208ENST00000622815 614 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 AC068137.3-201ENST00000639191 341 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
LHX3Q9UBR4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.85□□□□□ -2.11
LHX3Q9UBR4 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
LHX3Q9UBR4 AC008555.8-201ENST00000623602 2168 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.84□□□□□ -2.11
LHX3Q9UBR4 RNA5SP276-201ENST00000362580 94 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 SNORA16.1-201ENST00000364597 132 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 MIR764-201ENST00000390811 85 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 RNU6-908P-201ENST00000410160 94 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 MTND1P23-201ENST00000416931 372 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 MTCO1P20-201ENST00000425366 358 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.84□□□□□ -2.11
LHX3Q9UBR4 RPL23AP63-201ENST00000498752 471 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 AC008628.2-201ENST00000502605 298 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 AC107393.1-201ENST00000512403 346 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 RNU6-991P-201ENST00000516168 107 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 RNU6-720P-201ENST00000516363 108 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 RNU6-567P-201ENST00000516746 107 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
LHX3Q9UBR4 AC021231.3-201ENST00000558497 370 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 MIR3935-201ENST00000583472 104 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 AC011494.1-201ENST00000596454 237 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.84□□□□□ -2.11
LHX3Q9UBR4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.84□□□□□ -2.11
LHX3Q9UBR4 MIR1321-201ENST00000637766 79 ntBASIC1.84□□□□□ -2.11
LHX3Q9UBR4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
LHX3Q9UBR4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.12
LHX3Q9UBR4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.84□□□□□ -2.12
LHX3Q9UBR4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
LHX3Q9UBR4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 Y_RNA.99-201ENST00000363138 105 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 RNU6-522P-201ENST00000364497 107 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 Y_RNA.373-201ENST00000365600 103 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 RNU6-26P-201ENST00000383985 107 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 Y_RNA.554-201ENST00000384672 102 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 RNU11-3P-201ENST00000391111 133 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 EIF4E2P1-201ENST00000393781 255 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AL357139.1-201ENST00000407792 426 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 U3.40-201ENST00000408706 208 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 RNA5SP201-201ENST00000410316 124 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 Y_RNA.615-201ENST00000410769 117 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AL356379.1-201ENST00000414105 126 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 CYCSP49-201ENST00000420810 319 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 BX510359.4-201ENST00000423750 193 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 ERLEC1P1-201ENST00000433806 578 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AC104564.1-201ENST00000493028 407 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 MIR449C-201ENST00000516047 92 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 RNU6-612P-201ENST00000516909 102 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AC109446.1-201ENST00000566172 220 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 MIR3124-201ENST00000582636 67 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AC078795.3-201ENST00000602913 472 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AL078605.1-201ENST00000603529 500 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 DISC2.1-201ENST00000612827 205 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 SDR42E1P4-201ENST00000620894 481 ntBASIC1.83□□□□□ -2.12
LHX3Q9UBR4 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 FER-210ENST00000628534 558 ntTSL 5 BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
LHX3Q9UBR4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 RNU6-234P-201ENST00000365229 104 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 RNU6-1329P-201ENST00000365664 107 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 MIR504-201ENST00000385065 83 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 RNA5SP465-201ENST00000391195 109 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 SNORA26.9-201ENST00000391322 122 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 SRIP2-201ENST00000428470 166 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 MRPS10P2-201ENST00000431226 381 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 AL359672.1-201ENST00000442302 409 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 AC007677.1-201ENST00000445757 515 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 FTH1P25-201ENST00000447665 469 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.82□□□□□ -2.12
LHX3Q9UBR4 RPL23AP3-201ENST00000453844 468 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 RPL9P9-202ENST00000466501 579 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 RPL23AP42-201ENST00000471152 471 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 RNU6-1332P-201ENST00000516666 104 ntBASIC1.82□□□□□ -2.12
LHX3Q9UBR4 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms