Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MTCO3P8-201ENST00000453691 755 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 RPL21P39-201ENST00000463605 483 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AC087190.1-201ENST00000484462 480 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AC107032.1-201ENST00000485945 480 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AC132942.1-201ENST00000486753 483 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AC093591.1-201ENST00000491435 481 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 RPL21P16-201ENST00000495531 483 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 SNORA25.11-201ENST00000515935 105 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 SCARNA17.1-201ENST00000516211 143 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 SCARNA17.2-201ENST00000516334 143 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 Y_RNA.715-201ENST00000517082 110 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 SCARNA20.6-201ENST00000517251 106 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AC090617.3-201ENST00000573670 475 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.12□□□□□ -1.91
TDP1Q9NUW8 SCARNA17.4-201ENST00000614296 143 ntBASIC3.12□□□□□ -1.91
TDP1Q9NUW8 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.12□□□□□ -1.91
TDP1Q9NUW8 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
TDP1Q9NUW8 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 Y_RNA.380-201ENST00000365663 111 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 RNU6-851P-201ENST00000384565 107 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 Y_RNA.526-201ENST00000384572 110 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 MIR1252-201ENST00000408861 65 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AC006539.3-201ENST00000454258 129 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AC091179.1-201ENST00000461606 579 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AP000870.1-201ENST00000472927 406 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 HMGB1P35-201ENST00000503360 598 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 RNA5SP367-201ENST00000516557 118 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AC091144.1-201ENST00000519573 138 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AC027288.2-201ENST00000553028 243 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 MIR3136-201ENST00000583498 78 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 AL359854.1-201ENST00000614203 1594 ntBASIC3.11□□□□□ -1.91
TDP1Q9NUW8 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
TDP1Q9NUW8 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AC073325.2-201ENST00000339545 159 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 RNU1-75P-201ENST00000347264 129 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 Y_RNA.144-201ENST00000363521 113 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 Y_RNA.319-201ENST00000365138 92 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 SNORA51.11-201ENST00000384442 131 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 RNU1-57P-201ENST00000384491 166 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 USP9YP16-201ENST00000430287 407 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 RPS12P18-201ENST00000442381 270 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.1□□□□□ -1.91
TDP1Q9NUW8 USP9YP23-201ENST00000455085 407 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 RPL31P41-201ENST00000477967 372 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AC010655.3-201ENST00000478818 450 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.1□□□□□ -1.91
TDP1Q9NUW8 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.1□□□□□ -1.91
TDP1Q9NUW8 RPL23AP94-201ENST00000512518 302 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 SCGB1D5P-201ENST00000515134 247 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 RNA5SP217-201ENST00000515959 91 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 RNU6-567P-201ENST00000516746 107 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AC107016.2-201ENST00000547968 190 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AC008269.2-201ENST00000561915 1105 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.1□□□□□ -1.91
TDP1Q9NUW8 ELOCP29-201ENST00000588193 334 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AC008739.2-201ENST00000597006 317 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AL355297.3-201ENST00000604082 446 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AL034555.1-201ENST00000604816 211 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 AL021879.1-201ENST00000611756 288 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 MIR7153-201ENST00000637758 57 ntBASIC3.1□□□□□ -1.91
TDP1Q9NUW8 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
TDP1Q9NUW8 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
TDP1Q9NUW8 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.91
TDP1Q9NUW8 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.09□□□□□ -1.91
TDP1Q9NUW8 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.09□□□□□ -1.91
TDP1Q9NUW8 AP003122.5-201ENST00000527668 3766 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
TDP1Q9NUW8 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
TDP1Q9NUW8 RNU6-1159P-201ENST00000362933 107 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 RNU6-1083P-201ENST00000384022 107 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 RPS26P42-201ENST00000413485 326 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 RPL32P35-201ENST00000415214 394 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 AL135938.1-201ENST00000443141 297 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.09□□□□□ -1.91
TDP1Q9NUW8 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.09□□□□□ -1.91
TDP1Q9NUW8 AL121594.1-201ENST00000475906 575 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 AC091826.1-201ENST00000514065 313 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 MIR2355-201ENST00000517199 87 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 AL442163.3-201ENST00000554110 156 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.09□□□□□ -1.91
TDP1Q9NUW8 GTF3AP2-201ENST00000557014 266 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 RPS29P30-201ENST00000600975 111 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 AL133393.1-201ENST00000603277 287 ntBASIC3.09□□□□□ -1.91
TDP1Q9NUW8 AC006023.1-201ENST00000603944 259 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 200.2 ms