Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AL030996.1-201ENST00000411430 235 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AL353689.1-201ENST00000438895 199 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 RPL9P9-202ENST00000466501 579 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC104564.1-201ENST00000493028 407 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC091874.1-201ENST00000511402 339 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 RNU6-567P-201ENST00000516746 107 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 SNRPGP18-201ENST00000553000 214 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC100830.2-201ENST00000581636 240 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC078795.3-201ENST00000602913 472 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AL078605.1-201ENST00000603529 500 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC068944.2-201ENST00000610373 403 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.91□□□□□ -2.1
DDX28Q9NUL7 AL450472.1-202ENST00000637286 180 ntBASIC1.91□□□□□ -2.1
DDX28Q9NUL7 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
DDX28Q9NUL7 RNU6-227P-201ENST00000362865 103 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 RNY3P3-201ENST00000363816 102 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 RNU6-743P-201ENST00000364151 106 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 MIR450B-201ENST00000401182 78 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 RNA5SP201-201ENST00000410316 124 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 MTCO1P20-201ENST00000425366 358 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 UBE2V1P4-201ENST00000425374 344 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AL589823.1-201ENST00000429577 183 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 U8.21-201ENST00000459536 136 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC083904.1-201ENST00000487828 231 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC114801.2-201ENST00000503825 781 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC092436.3-201ENST00000511788 257 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 RPL39P5-202ENST00000512505 151 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC025465.4-201ENST00000513422 638 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 SCARNA16.3-201ENST00000516595 184 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC104576.1-201ENST00000524225 88 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 SCOCP1-201ENST00000554676 349 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 ZNF519P2-201ENST00000557032 169 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC015712.3-201ENST00000559380 164 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC026464.5-201ENST00000562497 722 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 MIR4299-201ENST00000577899 72 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 BNIP3P25-201ENST00000596023 559 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC005034.5-201ENST00000604219 466 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 PCGEM1.1-201ENST00000613431 131 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC005296.1-201ENST00000616145 209 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 DUXAP9-208ENST00000622815 614 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 SNORA43.4-201ENST00000629559 138 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
DDX28Q9NUL7 ZNF702P-202ENST00000434269 1966 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 AC009541.1-201ENST00000438279 2662 ntBASIC1.9□□□□□ -2.11
DDX28Q9NUL7 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.89□□□□□ -2.11
DDX28Q9NUL7 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.38-201ENST00000362617 102 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.402-201ENST00000383972 102 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 RNU6-26P-201ENST00000383985 107 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 SNORD14D-201ENST00000384390 87 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
DDX28Q9NUL7 SNORA12-201ENST00000391162 147 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 AC096920.1-201ENST00000423991 241 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.89□□□□□ -2.11
DDX28Q9NUL7 MRPS10P2-201ENST00000431226 381 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 AL591806.2-201ENST00000433122 173 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 AC093259.1-201ENST00000509755 300 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 HSPE1P18-201ENST00000517602 280 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 AC109635.3-201ENST00000529536 185 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 AC016256.1-201ENST00000547971 354 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.89□□□□□ -2.11
DDX28Q9NUL7 CYP4A27P-201ENST00000567218 190 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.89□□□□□ -2.11
DDX28Q9NUL7 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.89□□□□□ -2.11
DDX28Q9NUL7 Z98751.3-201ENST00000604447 521 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 AC012557.2-201ENST00000605919 418 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 AC064807.4-201ENST00000607201 407 ntBASIC1.89□□□□□ -2.11
DDX28Q9NUL7 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.89□□□□□ -2.11
DDX28Q9NUL7 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
DDX28Q9NUL7 MTND5P6-201ENST00000422338 1798 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.9-201ENST00000362354 101 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 RNU6-451P-201ENST00000362921 107 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 RNU6-254P-201ENST00000363377 107 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 U3.9-201ENST00000363823 204 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.373-201ENST00000365600 103 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 RNU6-482P-201ENST00000391068 107 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 RNA5SP450-201ENST00000411206 102 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 EIF1AXP1-201ENST00000419267 435 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 HMGN2P3-201ENST00000433603 273 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 NDUFA5P4-201ENST00000436704 385 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 HMGN2P5-201ENST00000436882 273 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms