Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
USP44Q9H0E7 RNU6-1140P-201ENST00000410517 106 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.61□□□□□ -1.99
USP44Q9H0E7 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.61□□□□□ -1.99
USP44Q9H0E7 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.61□□□□□ -1.99
USP44Q9H0E7 AC103851.1-201ENST00000506833 274 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 SNORA25.11-201ENST00000515935 105 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 Y_RNA.682-201ENST00000516457 100 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 SNORA31.15-201ENST00000516771 132 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 RNA5SP454-201ENST00000517231 127 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 RNU6-586P-201ENST00000517265 104 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 AP005902.1-201ENST00000521358 186 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 AP005639.2-201ENST00000527592 928 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 AC021231.3-201ENST00000558497 370 ntBASIC2.61□□□□□ -1.99
USP44Q9H0E7 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.61□□□□□ -1.99
USP44Q9H0E7 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.61□□□□□ -1.99
USP44Q9H0E7 Z82195.2-201ENST00000612348 18351 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 RNU1-72P-201ENST00000362976 153 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.6□□□□□ -1.99
USP44Q9H0E7 AL139396.1-201ENST00000421137 167 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.6□□□□□ -1.99
USP44Q9H0E7 DAP3P1-201ENST00000441522 278 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.6□□□□□ -1.99
USP44Q9H0E7 RNU7-187P-201ENST00000458985 68 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 HMGB1P35-201ENST00000503360 598 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 RNU6-875P-201ENST00000516488 106 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 Y_RNA.702-201ENST00000516843 96 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.6□□□□□ -1.99
USP44Q9H0E7 HSPE1P4-201ENST00000550617 308 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 MIR5194-201ENST00000582634 120 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.6□□□□□ -1.99
USP44Q9H0E7 AL355297.2-201ENST00000604792 129 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 MIR8076-201ENST00000611401 83 ntBASIC2.6□□□□□ -1.99
USP44Q9H0E7 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
USP44Q9H0E7 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.6□□□□□ -1.99
USP44Q9H0E7 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.6□□□□□ -1.99
USP44Q9H0E7 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
USP44Q9H0E7 Z82209.1-201ENST00000422141 2135 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.59□□□□□ -1.99
USP44Q9H0E7 Y_RNA.40-201ENST00000362645 93 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
USP44Q9H0E7 AL356432.1-201ENST00000405809 419 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 HMGB1P18-201ENST00000438801 619 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.59□□□□□ -1.99
USP44Q9H0E7 MTND1P17-201ENST00000448961 204 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 AC130509.1-201ENST00000464158 433 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.59□□□□□ -1.99
USP44Q9H0E7 AC104564.1-201ENST00000493028 407 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.59□□□□□ -1.99
USP44Q9H0E7 RNU5F-2P-201ENST00000516066 82 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.59□□□□□ -1.99
USP44Q9H0E7 AC007375.1-201ENST00000554513 578 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.59□□□□□ -1.99
USP44Q9H0E7 AC078795.3-201ENST00000602913 472 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 AC009994.1-201ENST00000606889 253 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 AL133215.3-201ENST00000609801 448 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 AC104260.1-201ENST00000616660 539 ntBASIC2.59□□□□□ -1.99
USP44Q9H0E7 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.59□□□□□ -1.99
USP44Q9H0E7 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -2
USP44Q9H0E7 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.58□□□□□ -2
USP44Q9H0E7 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.58□□□□□ -2
USP44Q9H0E7 MIR1261-201ENST00000408659 82 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 SUMO1P4-201ENST00000429430 302 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 CBX3P6-201ENST00000430257 527 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.58□□□□□ -2
USP44Q9H0E7 AL031659.1-201ENST00000447075 539 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 RNU7-26P-201ENST00000458980 63 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 MTND5P5-201ENST00000503764 376 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.58□□□□□ -2
USP44Q9H0E7 AC018630.3-201ENST00000542637 96 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.58□□□□□ -2
USP44Q9H0E7 AC093249.1-201ENST00000567049 203 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 MIR4790-201ENST00000577799 79 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 uc_338.5-201ENST00000611839 155 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.58□□□□□ -2
USP44Q9H0E7 Y_RNA.783-201ENST00000613546 102 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 TPTEP1-208ENST00000636884 213 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.58□□□□□ -2
USP44Q9H0E7 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.58□□□□□ -2
USP44Q9H0E7 MTND4P12-201ENST00000498999 1377 ntBASIC2.58□□□□□ -2
USP44Q9H0E7 Y_RNA.70-201ENST00000362886 110 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 Y_RNA.151-201ENST00000363566 112 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 RNU6-1317P-201ENST00000364582 104 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 RNA5SP125-201ENST00000364843 120 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 Y_RNA.339-201ENST00000365325 102 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 MIR548K-201ENST00000408406 116 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 Y_RNA.604-201ENST00000410574 102 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 RNU6-325P-201ENST00000411132 105 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 NCOR1P3-201ENST00000420479 303 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.57□□□□□ -2
USP44Q9H0E7 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.57□□□□□ -2
USP44Q9H0E7 PCMTD1P1-201ENST00000455560 355 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 snoU13.15-201ENST00000459407 104 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.57□□□□□ -2
USP44Q9H0E7 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.57□□□□□ -2
USP44Q9H0E7 Y_RNA.691-201ENST00000516611 103 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.57□□□□□ -2
USP44Q9H0E7 AC005668.1-201ENST00000571142 476 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms