Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC012557.2-201ENST00000605919 418 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 RNU6-89P-201ENST00000606519 100 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 AC068944.2-201ENST00000610373 403 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 RMST_6.1-201ENST00000611980 203 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 AC087241.4-201ENST00000612441 480 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 AC103705.1-201ENST00000619013 241 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 MIR1248-201ENST00000629190 106 ntBASIC1.84□□□□□ -2.11
VPS39Q96JC1 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS39Q96JC1 RNU6-522P-201ENST00000364497 107 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 Y_RNA.481-201ENST00000384373 102 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 MIR514A2-201ENST00000385131 88 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 MIR514A3-201ENST00000385132 88 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 RPS29P13-201ENST00000402041 169 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 AL445685.2-201ENST00000422551 342 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 OOSP1P1-201ENST00000423265 274 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 TIMM9P3-201ENST00000428659 274 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 RNU6-720P-201ENST00000516363 108 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 SNORA31.16-201ENST00000516773 139 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 RNU6-323P-201ENST00000521915 107 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 AC025423.5-201ENST00000550230 219 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 MIR3198-2-201ENST00000577868 80 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 MIR3945-201ENST00000581853 98 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 CTHRC1P1-201ENST00000605383 469 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 AC073534.2-201ENST00000620377 381 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 AC233981.2-201ENST00000611524 1614 ntBASIC1.83□□□□□ -2.12
VPS39Q96JC1 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
VPS39Q96JC1 OR4G1P-203ENST00000641984 1631 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 AL356292.1-201ENST00000283110 373 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 SNORD32A-201ENST00000364805 84 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 RNU6-1222P-201ENST00000384615 107 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 SNORA12-201ENST00000391162 147 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 MIR934-201ENST00000401241 83 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 AL079342.1-201ENST00000401460 267 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 RNU4-26P-201ENST00000410270 107 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 SNAP23P1-201ENST00000433229 246 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS39Q96JC1 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS39Q96JC1 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS39Q96JC1 MIR449C-201ENST00000516047 92 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 RNU6-1069P-201ENST00000516612 133 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 AC109479.2-201ENST00000517842 174 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.82□□□□□ -2.12
VPS39Q96JC1 COPS8P3-201ENST00000526024 482 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.82□□□□□ -2.12
VPS39Q96JC1 AC024614.2-201ENST00000577584 372 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 AC064807.4-201ENST00000607201 407 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 AL357078.3-201ENST00000607528 618 ntBASIC1.82□□□□□ -2.12
VPS39Q96JC1 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
VPS39Q96JC1 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
VPS39Q96JC1 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
VPS39Q96JC1 CBX3P1-201ENST00000325243 554 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
VPS39Q96JC1 RNU4-15P-201ENST00000362613 141 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 RNU6-1252P-201ENST00000363054 104 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 Y_RNA.373-201ENST00000365600 103 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 SNORA36A-201ENST00000384221 132 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 SNORA48.1-201ENST00000390879 135 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.81□□□□□ -2.12
VPS39Q96JC1 MTCO1P21-201ENST00000416634 589 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 MTCO1P20-201ENST00000425366 358 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 RNU7-138P-201ENST00000459479 64 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 RNU6-1208P-201ENST00000459588 107 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 AC027575.1-201ENST00000481064 460 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 RNU6-991P-201ENST00000516168 107 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 AC115990.1-201ENST00000526957 301 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 MIR3122-201ENST00000577243 73 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 MIR4419B-201ENST00000577260 68 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 MIR3618-201ENST00000580330 88 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 MIR4285-201ENST00000581001 85 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 BNIP3P16-201ENST00000589779 534 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 AP000654.2-201ENST00000605633 586 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 AC116312.1-201ENST00000606841 314 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 AC004492.1-201ENST00000607036 742 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 AC104458.1-201ENST00000608243 463 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 FAM157A-202ENST00000615155 405 ntBASIC1.81□□□□□ -2.12
VPS39Q96JC1 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
VPS39Q96JC1 SNORD114-1-201ENST00000362705 72 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 RNU6-451P-201ENST00000362921 107 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 Y_RNA.231-201ENST00000364358 102 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 RNU6-160P-201ENST00000384591 107 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 MIR548F1-201ENST00000408667 84 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 MRPS10P2-201ENST00000431226 381 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 AC003989.2-201ENST00000440224 169 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.8□□□□□ -2.12
VPS39Q96JC1 AL035666.1-201ENST00000446195 348 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 AL513124.1-201ENST00000450410 614 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.8□□□□□ -2.12
VPS39Q96JC1 Y_RNA.654-201ENST00000497848 106 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 AC091435.1-201ENST00000505442 584 ntBASIC1.8□□□□□ -2.12
VPS39Q96JC1 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.8□□□□□ -2.12
VPS39Q96JC1 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms