Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 TRAV37-201ENST00000553906 342 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 H3F3AP1-201ENST00000559984 334 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.33□□□□□ -1.88
CHFRQ96EP1 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 AC018692.3-201ENST00000623929 123 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.33□□□□□ -1.88
CHFRQ96EP1 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHFRQ96EP1 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.33□□□□□ -1.88
CHFRQ96EP1 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHFRQ96EP1 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHFRQ96EP1 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHFRQ96EP1 RNU6-1301P-201ENST00000362724 104 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.82-201ENST00000363000 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.92-201ENST00000363043 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.235-201ENST00000364412 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.306-201ENST00000365015 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.312-201ENST00000365089 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.322-201ENST00000365151 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.435-201ENST00000384095 112 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.580-201ENST00000391004 95 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 SNORD78.2-201ENST00000391076 69 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.586-201ENST00000391146 98 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.590-201ENST00000410140 107 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 RNU2-61P-201ENST00000411069 191 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 AC126124.2-201ENST00000413542 321 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.650-201ENST00000459002 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 RPS29P27-201ENST00000463711 170 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 UBE2DNL-203ENST00000474922 222 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 ANXA2P1-201ENST00000505539 926 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 AC008885.1-201ENST00000514930 301 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.777-201ENST00000516982 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.32□□□□□ -1.88
CHFRQ96EP1 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CHFRQ96EP1 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.32□□□□□ -1.88
CHFRQ96EP1 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.771-201ENST00000598668 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 Y_RNA.789-201ENST00000622480 102 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.32□□□□□ -1.88
CHFRQ96EP1 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CHFRQ96EP1 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
CHFRQ96EP1 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.32□□□□□ -1.88
CHFRQ96EP1 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.32□□□□□ -1.88
CHFRQ96EP1 AP003122.5-201ENST00000527668 3766 ntBASIC3.32□□□□□ -1.88
CHFRQ96EP1 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.31□□□□□ -1.88
CHFRQ96EP1 SNORD116-18-201ENST00000383961 92 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 Y_RNA.623-201ENST00000411128 95 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AL592148.1-201ENST00000413568 445 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AL117339.3-201ENST00000418733 162 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.31□□□□□ -1.88
CHFRQ96EP1 AL592045.1-201ENST00000429867 352 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AL162725.1-201ENST00000435405 301 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.31□□□□□ -1.88
CHFRQ96EP1 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.31□□□□□ -1.88
CHFRQ96EP1 AC092798.1-201ENST00000458542 409 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 U8.21-201ENST00000459536 136 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.31□□□□□ -1.88
CHFRQ96EP1 MIR2355-201ENST00000517199 87 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 SNORA31.22-201ENST00000517204 135 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AC103996.1-201ENST00000555468 102 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.31□□□□□ -1.88
CHFRQ96EP1 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.31□□□□□ -1.88
CHFRQ96EP1 RPL23AP78-201ENST00000599928 470 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AC004852.3-201ENST00000614131 326 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AC090617.7-201ENST00000623952 126 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 Z99571.1-201ENST00000636677 394 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AC092435.3-201ENST00000565538 3654 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 AL355596.1-201ENST00000565399 3996 ntBASIC3.31□□□□□ -1.88
CHFRQ96EP1 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHFRQ96EP1 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CHFRQ96EP1 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.3□□□□□ -1.88
CHFRQ96EP1 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHFRQ96EP1 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CHFRQ96EP1 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHFRQ96EP1 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.3□□□□□ -1.88
CHFRQ96EP1 Y_RNA.353-201ENST00000365440 108 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 SNORA7.4-201ENST00000384249 137 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 RNU6-658P-201ENST00000384606 106 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 RNU4-30P-201ENST00000410245 143 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 RNU2-43P-201ENST00000410306 190 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.3□□□□□ -1.88
CHFRQ96EP1 AC005002.2-201ENST00000438228 269 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 PIGFP3-201ENST00000441918 722 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 AC025750.2-201ENST00000442609 450 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 AC010401.1-201ENST00000463867 348 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 RPS4XP22-201ENST00000480755 780 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 Y_RNA.679-201ENST00000516416 91 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 SNORA31.26-201ENST00000517250 137 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.3□□□□□ -1.88
CHFRQ96EP1 HMGB1P14-201ENST00000557424 591 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.3□□□□□ -1.88
CHFRQ96EP1 UBL5P2-201ENST00000583788 219 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 AC091895.1-201ENST00000624494 256 ntBASIC3.3□□□□□ -1.88
CHFRQ96EP1 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.3□□□□□ -1.88
CHFRQ96EP1 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CHFRQ96EP1 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CHFRQ96EP1 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CHFRQ96EP1 FAM35BP-202ENST00000497389 3337 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms