Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MIR4435-1-201ENST00000582552 80 ntBASIC2.41□□□□□ -2.02
BEST3Q8N1M1 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
BEST3Q8N1M1 HMGB1P24-202ENST00000615653 685 ntBASIC2.41□□□□□ -2.02
BEST3Q8N1M1 AL450472.1-202ENST00000637286 180 ntBASIC2.41□□□□□ -2.02
BEST3Q8N1M1 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
BEST3Q8N1M1 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.4□□□□□ -2.02
BEST3Q8N1M1 ZNF299P-201ENST00000406845 1804 ntBASIC2.4□□□□□ -2.02
BEST3Q8N1M1 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 RNU6-1180P-201ENST00000364935 107 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 Y_RNA.431-201ENST00000384086 102 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 SNORA29-201ENST00000384183 140 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 RNU6-310P-201ENST00000384655 107 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AL139095.1-201ENST00000404326 391 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 Y_RNA.646-201ENST00000410980 101 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 RNU6-1304P-201ENST00000411374 106 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 MTND4P28-201ENST00000426217 387 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 ELOCP24-201ENST00000456370 334 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 RPL30P15-201ENST00000457129 321 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 RNA5SP282-201ENST00000516355 108 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 SNORA31.16-201ENST00000516773 139 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 MRPS36P4-201ENST00000534436 298 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AL034555.1-201ENST00000604816 211 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AL670379.2-201ENST00000604983 252 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 AC084781.2-201ENST00000615568 161 ntBASIC2.4□□□□□ -2.03
BEST3Q8N1M1 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.4□□□□□ -2.03
BEST3Q8N1M1 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 RNU1-72P-201ENST00000362976 153 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 VTRNA1-1-201ENST00000363120 99 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 DEFA7P-201ENST00000382676 285 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 Y_RNA.533-201ENST00000384596 114 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 SNORA41-201ENST00000384675 132 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 RNU6-331P-201ENST00000384724 107 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 FO393413.1-201ENST00000402892 195 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 AC243428.1-201ENST00000421099 264 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 AC092427.1-202ENST00000430569 476 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 AL445687.1-201ENST00000439946 251 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 UBBP3-201ENST00000445497 241 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 AL353705.4-201ENST00000449661 238 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 RNU7-152P-201ENST00000458982 64 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 RN7SL429P-201ENST00000479090 223 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 RN7SL489P-201ENST00000486185 223 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 RN7SL327P-201ENST00000488659 223 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 RNA5SP384-201ENST00000516615 116 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 CBX3P8-201ENST00000532412 525 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 MIR3923-201ENST00000579521 83 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 7SK.7-201ENST00000603504 247 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 RN7SL853P-201ENST00000617250 223 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 AL449363.1-201ENST00000617815 186 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 MIR5739-201ENST00000619803 80 ntBASIC2.39□□□□□ -2.03
BEST3Q8N1M1 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.39□□□□□ -2.03
BEST3Q8N1M1 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
BEST3Q8N1M1 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.38□□□□□ -2.03
BEST3Q8N1M1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
BEST3Q8N1M1 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
BEST3Q8N1M1 Y_RNA.11-201ENST00000362375 109 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 RNU5B-2P-201ENST00000363036 113 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 Y_RNA.187-201ENST00000363918 113 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 RNU6-595P-201ENST00000363944 107 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 RNU4-9P-201ENST00000364951 139 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 Y_RNA.315-201ENST00000365117 102 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 RNU1-109P-201ENST00000383960 147 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 Y_RNA.535-201ENST00000384612 99 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 RNU6-220P-201ENST00000390919 107 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 SNORA75.6-201ENST00000391318 127 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 RNA5SP508-201ENST00000411327 119 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.38□□□□□ -2.03
BEST3Q8N1M1 AC012306.1-201ENST00000423267 114 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.38□□□□□ -2.03
BEST3Q8N1M1 RPL23AP50-201ENST00000434149 455 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.38□□□□□ -2.03
BEST3Q8N1M1 AC011816.1-201ENST00000441346 546 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 MTCO3P10-201ENST00000455912 772 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 SCARNA16.2-201ENST00000516520 172 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.38□□□□□ -2.03
BEST3Q8N1M1 AC093249.1-201ENST00000567049 203 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 AC090616.3-201ENST00000582184 217 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.38□□□□□ -2.03
BEST3Q8N1M1 AL158827.2-201ENST00000602494 330 ntBASIC2.38□□□□□ -2.03
BEST3Q8N1M1 AL078605.1-201ENST00000603529 500 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 188.6 ms