Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC096531.1-201ENST00000419107 107 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 MRPS36P1-201ENST00000421291 307 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 MTCYBP5-201ENST00000423752 1135 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 AL590632.1-201ENST00000424289 371 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 AL596276.1-201ENST00000434465 418 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 RPL39P6-201ENST00000448289 150 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 SNORA31.3-201ENST00000516029 96 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 AP003049.1-201ENST00000529418 457 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 NTS-203ENST00000551529 801 ntTSL 3 BASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 MIR4300-201ENST00000581016 96 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 MIR4743-201ENST00000584576 69 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 UGP2-230ENST00000626380 276 ntTSL 5 BASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 AC010487.4-201ENST00000637027 61 ntBASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC-0.73□□□□□ -2.53
LINC00643Q86TS7 RNU6-756P-201ENST00000383997 107 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 MIR7-1-201ENST00000384871 110 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 MIR660-201ENST00000385235 97 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 RNU6-57P-201ENST00000411348 103 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 SNORD83.1-201ENST00000411362 77 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 BTF3L4P1-201ENST00000413813 468 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 NDUFB4P10-201ENST00000452541 359 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 ART2BP-201ENST00000453501 499 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 RNU6-917P-201ENST00000516294 104 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 SNORA31.10-201ENST00000516482 106 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 AL390123.1-201ENST00000603216 237 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 AL034555.1-201ENST00000604816 211 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 AC004832.4-201ENST00000608952 331 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 AL096861.1-201ENST00000610899 123 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 AC007742.2-201ENST00000618226 398 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 AC097372.5-201ENST00000623665 376 ntBASIC-0.74□□□□□ -2.53
LINC00643Q86TS7 RNU6-492P-201ENST00000363035 104 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 SNORD116-20-201ENST00000384529 92 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 RNU1-139P-201ENST00000391307 165 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 SNORA75.6-201ENST00000391318 127 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 MTCO1P3-201ENST00000429327 192 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 AC007395.1-201ENST00000451333 677 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 LINC01399-202ENST00000458450 244 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 RNU6-856P-201ENST00000516959 98 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 MIR4498-201ENST00000577599 66 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 MIR4764-201ENST00000580680 88 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 MIR4637-201ENST00000582405 84 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 AC091135.1-201ENST00000585943 307 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 AC092447.9-201ENST00000603395 144 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 MIR6504-201ENST00000613520 61 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 AC007014.2-201ENST00000615581 479 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 MIR338-201ENST00000636369 67 ntBASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.75□□□□□ -2.53
LINC00643Q86TS7 RNU6-97P-201ENST00000363387 104 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 SNORA18.1-201ENST00000363418 128 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 SNORA33-201ENST00000363664 130 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 RN7SKP200-201ENST00000410564 320 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 RPS25P9-201ENST00000435591 252 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 STAG3L5P-204ENST00000443759 179 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 GTF2IP12-201ENST00000456547 356 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 SCARNA8-201ENST00000515924 131 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 MIR4778-201ENST00000577635 80 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 MIR3612-201ENST00000579753 87 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 MIR4452-201ENST00000583004 71 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 AC090617.9-201ENST00000623751 147 ntBASIC-0.76□□□□□ -2.53
LINC00643Q86TS7 RNU6-819P-201ENST00000364116 107 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 RNU6-707P-201ENST00000364647 95 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 AL445305.1-201ENST00000432577 575 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 TPT1P7-201ENST00000458300 517 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 AC016925.1-201ENST00000458303 298 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 RNU7-56P-201ENST00000458744 62 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 RNA5SP458-201ENST00000516188 119 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 AK6P2-201ENST00000549020 471 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 BNIP3P9-201ENST00000603714 553 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 MTND3P19-201ENST00000603825 345 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 uc_338.16-201ENST00000621804 95 ntBASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC-0.77□□□□□ -2.53
LINC00643Q86TS7 MIR1-1-201ENST00000362147 71 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 SNORD31B-201ENST00000364977 69 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 RNU6-673P-201ENST00000365084 104 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 SNORA2.2-201ENST00000365473 135 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 PCNPP3-201ENST00000393579 471 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 SNORD111-201ENST00000408139 94 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 MRPL42P4-201ENST00000453267 443 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 RPL18AP17-201ENST00000455326 198 ntBASIC-0.78□□□□□ -2.53
LINC00643Q86TS7 AL122001.1-201ENST00000457027 370 ntBASIC-0.78□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms