Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 SNORD114-6-201ENST00000364393 72 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 RNU6-1158P-201ENST00000391167 107 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 RPS20P15-201ENST00000412792 311 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 AL513185.2-201ENST00000425543 193 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 AC002486.1-201ENST00000435098 391 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 AC087884.1-201ENST00000469738 328 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 AL163973.1-201ENST00000484753 577 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 HMGB1P29-201ENST00000505659 499 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 AC091874.1-201ENST00000511402 339 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 RN7SKP298-201ENST00000515950 94 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 MTND4P7-201ENST00000523876 130 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 AC109446.1-201ENST00000566172 220 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 AL158211.1-201ENST00000566763 763 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 AL450472.1-202ENST00000637286 180 ntBASIC1.47□□□□□ -2.17
TRIM40Q6P9F5 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.46□□□□□ -2.17
TRIM40Q6P9F5 Y_RNA.77-201ENST00000362962 107 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.553-201ENST00000384670 102 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 SNORA67.5-201ENST00000391036 107 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 MTCO1P19-201ENST00000443487 500 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 MTCO2P18-201ENST00000457151 658 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 AMD1P1-201ENST00000457220 922 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 RNU1-131P-201ENST00000458943 161 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 RNU7-138P-201ENST00000459479 64 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 RPS3AP17-201ENST00000472594 777 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 CCDC34P1-201ENST00000507441 517 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 AC010486.3-201ENST00000511602 785 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 RNVU1-2-201ENST00000516326 135 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.675-201ENST00000516389 149 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 AC119751.7-201ENST00000600494 245 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 HULC.1-201ENST00000612720 240 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 PCGEM1.1-201ENST00000613431 131 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 AL354950.2-201ENST00000617939 290 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 AC233981.2-201ENST00000611524 1614 ntBASIC1.46□□□□□ -2.18
TRIM40Q6P9F5 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 U3.9-201ENST00000363823 204 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 RNU4-42P-201ENST00000364738 142 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.296-201ENST00000364930 108 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.504-201ENST00000384481 104 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 SNORA67.6-201ENST00000391093 99 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AL606923.1-201ENST00000406616 190 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 RNA5SP100-201ENST00000410903 110 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 RNA5SP59-201ENST00000410922 110 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AP000275.1-201ENST00000411943 390 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AC123900.1-201ENST00000420390 96 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AL353193.1-201ENST00000421444 268 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 MTCO2P3-201ENST00000442543 421 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AC008628.2-201ENST00000502605 298 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AC108078.1-201ENST00000508073 725 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 ATP5EP1-201ENST00000510257 156 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 RNU6-567P-201ENST00000516746 107 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 HSBP1P1-201ENST00000555205 166 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AC021231.3-201ENST00000558497 370 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 CYP4A27P-201ENST00000567218 190 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 MIR4424-201ENST00000585257 86 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 Z98751.3-201ENST00000604447 521 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AC010900.2-201ENST00000604508 210 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 AC007684.1-201ENST00000609671 477 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.1-201ENST00000352915 104 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 RNU6-457P-201ENST00000363999 107 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.255-201ENST00000364581 97 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 RNA5SP219-201ENST00000390940 113 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 SNORA17.3-201ENST00000391159 129 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 MIR1304-201ENST00000408243 91 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 MTCO3P41-201ENST00000414801 328 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 VN1R36P-201ENST00000414936 291 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AC007098.1-201ENST00000420122 367 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AC010424.1-201ENST00000506336 297 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 SNORA14.1-201ENST00000516113 141 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 SNORA31.24-201ENST00000517232 57 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AC026407.1-201ENST00000518369 204 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 EIF4A1P12-201ENST00000551910 141 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AC005786.1-201ENST00000588553 154 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AC087683.1-201ENST00000591187 441 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms