Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC007560.1-201ENST00000426912 237 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 TOMM20P4-201ENST00000427861 435 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 AC016700.2-201ENST00000446011 156 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.35□□□□□ -1.87
USP39Q53GS9 RPS4XP2-201ENST00000458402 793 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 snoU109.2-201ENST00000459316 135 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.35□□□□□ -1.87
USP39Q53GS9 RNA5SP290-201ENST00000517133 127 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 HIGD1AP1-201ENST00000550979 275 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 MIR548AI-201ENST00000579940 88 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 MIR4423-201ENST00000580922 80 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 AL162424.1-201ENST00000602325 221 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 AC004832.4-201ENST00000608952 331 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.35□□□□□ -1.87
USP39Q53GS9 AC099506.2-201ENST00000623074 221 ntBASIC3.35□□□□□ -1.87
USP39Q53GS9 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
USP39Q53GS9 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.35□□□□□ -1.87
USP39Q53GS9 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.35□□□□□ -1.87
USP39Q53GS9 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
USP39Q53GS9 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
USP39Q53GS9 CUL1P1-201ENST00000509510 2425 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.34□□□□□ -1.87
USP39Q53GS9 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
USP39Q53GS9 AC233981.2-201ENST00000611524 1614 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.34□□□□□ -1.87
USP39Q53GS9 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.34□□□□□ -1.87
USP39Q53GS9 RNU6-858P-201ENST00000362436 107 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 RNU6-173P-201ENST00000364215 104 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 SNORD50.2-201ENST00000365465 70 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 Y_RNA.383-201ENST00000383855 97 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 MIR34A-201ENST00000385130 110 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
USP39Q53GS9 RNU4-30P-201ENST00000410245 143 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 AL451074.5-201ENST00000415894 435 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.34□□□□□ -1.87
USP39Q53GS9 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.34□□□□□ -1.87
USP39Q53GS9 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.34□□□□□ -1.87
USP39Q53GS9 AC009296.1-201ENST00000443146 155 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 AL078601.1-201ENST00000444542 271 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 HMGB3P8-201ENST00000449709 577 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.34□□□□□ -1.87
USP39Q53GS9 AC021205.2-201ENST00000480069 347 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 RPL30P1-201ENST00000488676 339 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 AC006445.1-201ENST00000491925 405 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.34□□□□□ -1.87
USP39Q53GS9 SNORA70.19-201ENST00000516717 90 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 MIR2276-201ENST00000516886 89 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 RNU2-31P-201ENST00000516954 155 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 MED28P6-201ENST00000558776 231 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 RPL23AP88-201ENST00000605759 454 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 SNORD113-5-201ENST00000607261 78 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 U6.106-201ENST00000636360 105 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
USP39Q53GS9 AC007496.3-201ENST00000624987 3443 ntBASIC3.34□□□□□ -1.87
USP39Q53GS9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
USP39Q53GS9 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.34□□□□□ -1.88
USP39Q53GS9 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.34□□□□□ -1.88
USP39Q53GS9 AL513302.2-201ENST00000562313 1842 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.33□□□□□ -1.88
USP39Q53GS9 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.33□□□□□ -1.88
USP39Q53GS9 RNU6-105P-201ENST00000363909 104 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 Y_RNA.240-201ENST00000364469 95 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 Y_RNA.275-201ENST00000364726 110 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RNU6-81P-201ENST00000365608 104 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RNU6-72P-201ENST00000384285 79 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RNU6-804P-201ENST00000384286 107 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RNU6-918P-201ENST00000391219 106 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 BTF3L4P2-201ENST00000392798 346 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RPS4XP3-201ENST00000398541 413 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RNU6-394P-201ENST00000410735 107 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.33□□□□□ -1.88
USP39Q53GS9 AC006539.3-201ENST00000454258 129 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RPL26P26-201ENST00000480251 434 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 AC097462.2-201ENST00000504623 481 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RN7SKP272-201ENST00000516988 232 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 RNA5SP165-201ENST00000517142 115 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 ATP5F1P5-201ENST00000526403 760 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.33□□□□□ -1.88
USP39Q53GS9 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 MIR6076-201ENST00000617521 113 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.33□□□□□ -1.88
USP39Q53GS9 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP39Q53GS9 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.32□□□□□ -1.88
USP39Q53GS9 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.82-201ENST00000363000 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.92-201ENST00000363043 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 RNA5SP197-201ENST00000363357 119 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 SNORA80A-201ENST00000363922 136 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 SNORD115-32-201ENST00000364079 82 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.233-201ENST00000364407 101 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.235-201ENST00000364412 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.306-201ENST00000365015 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.312-201ENST00000365089 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 Y_RNA.322-201ENST00000365151 102 ntBASIC3.32□□□□□ -1.88
USP39Q53GS9 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 550.8 ms