Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNU6-222P-201ENST00000362438 107 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 Y_RNA.60-201ENST00000362831 98 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 Y_RNA.302-201ENST00000364997 102 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RNU6-1237P-201ENST00000384777 107 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AC069282.1-201ENST00000411911 526 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC0.45□□□□□ -2.34
CHD3Q12873 AC114737.2-201ENST00000421583 173 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RPL23AP95-201ENST00000426806 265 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.45□□□□□ -2.34
CHD3Q12873 AC007969.2-201ENST00000441891 191 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RNU6-953P-201ENST00000459154 107 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RPS26P45-201ENST00000471748 340 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RPS23P5-201ENST00000495419 428 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 LRRC34P2-201ENST00000514850 553 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RNU2-10P-201ENST00000516375 211 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RNU7-51P-201ENST00000516560 62 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 RNU5F-4P-201ENST00000516581 114 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 SUMO2P18-201ENST00000518873 252 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.45□□□□□ -2.34
CHD3Q12873 BNIP3P6-201ENST00000549284 499 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 MIR544B-201ENST00000582372 78 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 AC108747.1-201ENST00000609508 535 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 FRG1KP-201ENST00000623592 341 ntBASIC0.45□□□□□ -2.34
CHD3Q12873 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.44□□□□□ -2.34
CHD3Q12873 SNORA63.3-201ENST00000362682 132 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 RNU6-511P-201ENST00000363496 107 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 RNU6-743P-201ENST00000364151 106 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.44□□□□□ -2.34
CHD3Q12873 AC060773.1-201ENST00000421698 310 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 USP9YP11-201ENST00000427537 717 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.44□□□□□ -2.34
CHD3Q12873 AC244670.1-201ENST00000436879 112 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 AC016925.1-201ENST00000458303 298 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 HMGN2P9-201ENST00000476875 229 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 AC048334.1-201ENST00000477975 159 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 AC113347.3-201ENST00000509113 148 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.44□□□□□ -2.34
CHD3Q12873 RNA5SP503-201ENST00000517047 117 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.44□□□□□ -2.34
CHD3Q12873 APOOP3-201ENST00000536787 586 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 AC004812.1-201ENST00000540773 146 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 ZNF321P-202ENST00000550843 495 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC0.44□□□□□ -2.34
CHD3Q12873 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC0.44□□□□□ -2.34
CHD3Q12873 MIR5087-201ENST00000635826 76 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 SNORD98-201ENST00000636377 67 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 AC068205.3-201ENST00000636385 468 ntBASIC0.44□□□□□ -2.34
CHD3Q12873 SNORD56.1-201ENST00000362913 68 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 RNA5SP111-201ENST00000411386 101 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.43□□□□□ -2.34
CHD3Q12873 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.43□□□□□ -2.34
CHD3Q12873 OR2AQ1P-201ENST00000451972 200 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 AC010531.2-201ENST00000465012 153 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.43□□□□□ -2.34
CHD3Q12873 AC068790.6-201ENST00000602558 258 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 GHRLOS.1-201ENST00000610995 70 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 RNU6-462P-201ENST00000362659 105 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 RNU6-105P-201ENST00000363909 104 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 RNU4-1-201ENST00000363925 141 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.43□□□□□ -2.34
CHD3Q12873 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.43□□□□□ -2.34
CHD3Q12873 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.43□□□□□ -2.34
CHD3Q12873 AC137499.1-201ENST00000427602 88 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.43□□□□□ -2.34
CHD3Q12873 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.43□□□□□ -2.34
CHD3Q12873 AL162395.1-201ENST00000457882 422 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC0.43□□□□□ -2.34
CHD3Q12873 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC0.43□□□□□ -2.34
CHD3Q12873 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC0.43□□□□□ -2.34
CHD3Q12873 HMGN1P30-201ENST00000589286 268 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 SNORD3E-202ENST00000627253 216 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.43□□□□□ -2.34
CHD3Q12873 AC010615.1-201ENST00000594254 1764 ntBASIC0.43□□□□□ -2.34
CHD3Q12873 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
CHD3Q12873 RNU6-843P-201ENST00000384454 104 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 MIR605-201ENST00000385078 83 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 MIR301A-201ENST00000385261 86 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AC007547.1-201ENST00000462177 490 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC0.42□□□□□ -2.34
CHD3Q12873 AC004817.2-201ENST00000561794 651 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 RNU6-87P-201ENST00000607561 108 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AL356094.1-201ENST00000624663 1212 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AL159152.1-201ENST00000635019 2587 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 RNU4-15P-201ENST00000362613 141 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 U3.4-201ENST00000363352 213 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 RNU6-1141P-201ENST00000364520 107 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 Y_RNA.324-201ENST00000365165 102 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 SNORA12.2-201ENST00000391040 156 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AC006461.1-201ENST00000412637 326 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AL031779.1-201ENST00000415663 330 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 SNX2P2-201ENST00000424553 323 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AL589872.1-201ENST00000426602 288 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.42□□□□□ -2.34
CHD3Q12873 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.42□□□□□ -2.34
CHD3Q12873 COX6CP6-201ENST00000490840 228 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AC145146.1-201ENST00000496370 254 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AC011406.1-201ENST00000512440 370 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms