Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
COL4A3Q01955 MIR764-201ENST00000390811 85 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-1197P-201ENST00000391183 107 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
COL4A3Q01955 RPS4XP3-201ENST00000398541 413 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU2-52P-201ENST00000410680 190 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 AL606753.1-201ENST00000427435 87 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A3Q01955 MTATP6P7-201ENST00000453315 681 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A3Q01955 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A3Q01955 RNU6-1073P-201ENST00000517182 106 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 AK6P2-201ENST00000549020 471 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A3Q01955 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A3Q01955 MIR3133-201ENST00000583157 78 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 AL356157.2-201ENST00000605122 111 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 AC004832.5-201ENST00000608677 401 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 AC024581.2-201ENST00000619986 252 ntBASIC3.11□□□□□ -1.91
COL4A3Q01955 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A3Q01955 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A3Q01955 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A3Q01955 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A3Q01955 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A3Q01955 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
COL4A3Q01955 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.1□□□□□ -1.91
COL4A3Q01955 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A3Q01955 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A3Q01955 Y_RNA.122-201ENST00000363331 96 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 RNU6-626P-201ENST00000363354 107 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 RNU6-740P-201ENST00000364734 105 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 Y_RNA.292-201ENST00000364904 97 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 RNU6-898P-201ENST00000365627 104 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 SNORA29-201ENST00000384183 140 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 MTCO2P33-201ENST00000402100 465 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 MIR548I2-201ENST00000408348 149 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 SNORD12B-201ENST00000410433 91 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 Y_RNA.626-201ENST00000411288 95 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 AC022018.1-201ENST00000430685 241 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 EEF1B2P7-201ENST00000451177 676 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 RNU2-31P-201ENST00000516954 155 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 AC024405.2-202ENST00000532731 184 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 CR383656.8-201ENST00000549046 145 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 H3F3AP1-201ENST00000559984 334 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 AC005296.1-201ENST00000616145 209 ntBASIC3.1□□□□□ -1.91
COL4A3Q01955 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.1□□□□□ -1.91
COL4A3Q01955 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A3Q01955 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
COL4A3Q01955 RNU6-1159P-201ENST00000362933 107 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 Z98749.2-208ENST00000381646 500 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 RNU6-281P-201ENST00000384212 103 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 RPL21P66-201ENST00000426566 466 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.09□□□□□ -1.91
COL4A3Q01955 RN7SKP49-201ENST00000516675 260 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 RNU6-1198P-201ENST00000516904 67 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 RNU6-1231P-201ENST00000517185 103 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 AC104027.1-201ENST00000521887 300 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 AP004607.1-201ENST00000524456 203 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
COL4A3Q01955 AC025754.2-201ENST00000606491 432 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 AC037487.3-201ENST00000606668 112 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.09□□□□□ -1.91
COL4A3Q01955 U2.14-201ENST00000615943 113 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.09□□□□□ -1.91
COL4A3Q01955 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.09□□□□□ -1.91
COL4A3Q01955 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
COL4A3Q01955 AC090740.1-201ENST00000623193 2262 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 GABRG2-229ENST00000641017 3628 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A3Q01955 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A3Q01955 Y_RNA.569-201ENST00000384749 103 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 RNA5SP213-201ENST00000391031 106 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 RNU1-139P-201ENST00000391307 165 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 COX6CP10-201ENST00000416832 224 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AC074117.2-201ENST00000417130 397 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 MTCO1P5-201ENST00000433573 344 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A3Q01955 AC098831.1-201ENST00000440661 216 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.08□□□□□ -1.92
COL4A3Q01955 HMGN2P21-201ENST00000447764 270 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 SSXP4-201ENST00000451349 245 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AC087477.1-201ENST00000465747 340 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 COX6CP14-201ENST00000469580 174 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.08□□□□□ -1.92
COL4A3Q01955 RNU6-1212P-201ENST00000517023 104 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A3Q01955 uc_338.1-201ENST00000612113 180 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AL590808.1-201ENST00000618696 141 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A3Q01955 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A3Q01955 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.08□□□□□ -1.92
COL4A3Q01955 AL136964.1-201ENST00000622038 2990 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A3Q01955 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A3Q01955 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A3Q01955 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
COL4A3Q01955 RNU6-137P-201ENST00000363680 108 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 SNORA9.2-201ENST00000365361 133 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 Y_RNA.504-201ENST00000384481 104 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 SNORD116-20-201ENST00000384529 92 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms