Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.54□□□□□ -1.84
NKX3-2P78367 AC096638.1-201ENST00000444678 216 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.54□□□□□ -1.84
NKX3-2P78367 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.54□□□□□ -1.84
NKX3-2P78367 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.54□□□□□ -1.84
NKX3-2P78367 RNU6-581P-201ENST00000516214 105 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 AL137100.2-201ENST00000555786 315 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.54□□□□□ -1.84
NKX3-2P78367 AC019159.1-201ENST00000605094 187 ntBASIC3.54□□□□□ -1.84
NKX3-2P78367 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.54□□□□□ -1.84
NKX3-2P78367 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
NKX3-2P78367 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-2P78367 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.54□□□□□ -1.84
NKX3-2P78367 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
NKX3-2P78367 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
NKX3-2P78367 AL353746.1-201ENST00000566293 6881 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 RNU4-90P-201ENST00000362773 141 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 RNU6-270P-201ENST00000364131 105 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 RNU6-886P-201ENST00000384319 105 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 RNU6-541P-201ENST00000384709 110 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 AL139281.1-201ENST00000422120 335 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 AC002075.2-201ENST00000425207 252 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 RPL23AP82-202ENST00000427528 469 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 AL139132.1-201ENST00000431587 344 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 CENPBD1P1-201ENST00000464061 469 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 RPS4XP22-201ENST00000480755 780 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 SNORA31.23-201ENST00000517219 133 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 MIR5695-201ENST00000579717 85 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 MIR3162-201ENST00000581818 82 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 uc_338.25-201ENST00000613756 156 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 AC005296.1-201ENST00000616145 209 ntBASIC3.53□□□□□ -1.84
NKX3-2P78367 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
NKX3-2P78367 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.53□□□□□ -1.84
NKX3-2P78367 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-2P78367 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-2P78367 AC022336.2-201ENST00000568966 2538 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-2P78367 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-2P78367 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-2P78367 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-2P78367 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 Y_RNA.83-201ENST00000363005 113 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 Y_RNA.319-201ENST00000365138 92 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 RNU6-281P-201ENST00000384212 103 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 PCNPP3-201ENST00000393579 471 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 RNU6-1001P-201ENST00000411265 100 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.52□□□□□ -1.85
NKX3-2P78367 AC025750.2-201ENST00000442609 450 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 AL138752.1-201ENST00000452964 351 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 RPL26P26-201ENST00000480251 434 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-2P78367 HSPE1P4-201ENST00000550617 308 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.52□□□□□ -1.85
NKX3-2P78367 RMST_8.1-201ENST00000610287 165 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 AC127459.3-201ENST00000624328 466 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 AL137790.1-201ENST00000634283 177 ntBASIC3.52□□□□□ -1.85
NKX3-2P78367 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.52□□□□□ -1.85
NKX3-2P78367 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-2P78367 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-2P78367 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-2P78367 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
NKX3-2P78367 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
NKX3-2P78367 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
NKX3-2P78367 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
NKX3-2P78367 RNU6-774P-201ENST00000363238 107 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 RNU6-1280P-201ENST00000365211 107 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 RNU6-142P-201ENST00000384019 107 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 MIR184-201ENST00000384962 84 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 NDUFS5P4-201ENST00000412983 318 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 AC099548.1-201ENST00000421443 426 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 GPM6BP3-201ENST00000442797 145 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 Y_RNA.644-201ENST00000459006 113 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 Y_RNA.674-201ENST00000516362 113 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 MIR5571-201ENST00000577998 113 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 AL110115.1-201ENST00000614396 364 ntBASIC3.51□□□□□ -1.85
NKX3-2P78367 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.51□□□□□ -1.85
NKX3-2P78367 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
NKX3-2P78367 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.51□□□□□ -1.85
NKX3-2P78367 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-2P78367 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
NKX3-2P78367 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-2P78367 Y_RNA.44-201ENST00000362676 108 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 Y_RNA.199-201ENST00000364014 102 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 SNORA71.1-201ENST00000364523 117 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 RNU6-1035P-201ENST00000384477 107 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 RNU6-159P-201ENST00000391080 106 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.5□□□□□ -1.85
NKX3-2P78367 AL033519.2-201ENST00000403958 392 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 Y_RNA.793-201ENST00000411222 111 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.5□□□□□ -1.85
NKX3-2P78367 AC104332.1-201ENST00000440471 797 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 AP000705.1-201ENST00000454567 350 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 HMGN2P16-201ENST00000456802 261 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 snoU13.6-201ENST00000458785 104 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 RN7SL429P-201ENST00000479090 223 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 AP001025.1-201ENST00000486139 332 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 RN7SL489P-201ENST00000486185 223 ntBASIC3.5□□□□□ -1.85
NKX3-2P78367 RN7SL327P-201ENST00000488659 223 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms