Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 HMGB3P3-201ENST00000510526 400 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 RNU5F-2P-201ENST00000516066 82 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 SNORA9.3-201ENST00000516383 129 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXA1P49639 AL590705.4-201ENST00000532209 134 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.32□□□□□ -2.04
HOXA1P49639 SUB1P3-201ENST00000564581 315 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 AC004584.2-201ENST00000570407 410 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 MIR5004-201ENST00000579078 107 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 MIR4765-201ENST00000585007 77 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 AC073410.2-201ENST00000603240 332 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 AL355802.3-201ENST00000607571 545 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 SNORD98-201ENST00000636377 67 ntBASIC2.32□□□□□ -2.04
HOXA1P49639 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HOXA1P49639 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HOXA1P49639 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.32□□□□□ -2.04
HOXA1P49639 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXA1P49639 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
HOXA1P49639 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HOXA1P49639 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
HOXA1P49639 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXA1P49639 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HOXA1P49639 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXA1P49639 snoU2_19.1-201ENST00000362361 80 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 RNU6-222P-201ENST00000362438 107 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 SNORA63.1-201ENST00000362493 131 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 RNU5B-2P-201ENST00000363036 113 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 Y_RNA.252-201ENST00000364556 101 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
HOXA1P49639 Y_RNA.428-201ENST00000384078 102 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 MIR32-201ENST00000384965 70 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 SNORA12.2-201ENST00000391040 156 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AL512633.1-201ENST00000399931 655 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AL590004.1-201ENST00000405321 300 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AIMP1P2-201ENST00000425294 312 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXA1P49639 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXA1P49639 U8.22-201ENST00000459141 133 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXA1P49639 AC016632.1-201ENST00000503994 196 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXA1P49639 SNORD116.3-201ENST00000517176 78 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXA1P49639 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXA1P49639 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXA1P49639 AC090115.4-201ENST00000609970 188 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AC087588.2-201ENST00000617667 426 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AC091953.5-201ENST00000622919 233 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AC007792.1-201ENST00000623023 402 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AC091925.1-201ENST00000623204 462 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
HOXA1P49639 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HOXA1P49639 AL359854.1-201ENST00000614203 1594 ntBASIC2.31□□□□□ -2.04
HOXA1P49639 AC002543.1-201ENST00000299783 1954 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HOXA1P49639 RNU6-1010P-201ENST00000362757 107 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 SNORA33.2-201ENST00000365413 134 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 Y_RNA.364-201ENST00000365532 101 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 RNU6-1032P-201ENST00000384100 107 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 RNU6-851P-201ENST00000384565 107 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
HOXA1P49639 AL138885.1-201ENST00000405921 675 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 RN7SKP61-201ENST00000410642 295 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 AC113618.1-201ENST00000416747 285 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXA1P49639 AC097463.2-201ENST00000421074 142 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXA1P49639 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXA1P49639 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXA1P49639 AL353752.1-201ENST00000454946 260 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 RNU7-87P-201ENST00000459343 62 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 RPL7P49-201ENST00000471402 708 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 AL121594.1-201ENST00000475906 575 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 AC140059.1-201ENST00000489238 361 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXA1P49639 RNU4-77P-201ENST00000516692 156 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.3□□□□□ -2.04
HOXA1P49639 AC079598.5-201ENST00000547460 117 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 Z98751.3-201ENST00000604447 521 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 SNORD58B-201ENST00000607313 66 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 MIR92B-201ENST00000607575 96 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 RNU6-91P-201ENST00000607774 107 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 AC096772.1-201ENST00000609146 564 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 uc_338.14-201ENST00000613162 166 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 AC083806.3-201ENST00000614016 455 ntBASIC2.3□□□□□ -2.04
HOXA1P49639 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXA1P49639 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HOXA1P49639 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXA1P49639 AC091812.1-201ENST00000432235 1948 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 SNORA71.3-201ENST00000362582 128 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 Y_RNA.202-201ENST00000364083 110 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 RNU4-42P-201ENST00000364738 142 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 RNU1-57P-201ENST00000384491 166 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 Y_RNA.577-201ENST00000384794 101 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 RNU6-700P-201ENST00000391043 107 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXA1P49639 RPL30P4-201ENST00000429309 333 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXA1P49639 RPL23AP70-201ENST00000483361 460 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms