Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.66□□□□□ -2.3
RPL28P46779 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.66□□□□□ -2.3
RPL28P46779 UBL5P1-201ENST00000507979 193 ntBASIC0.66□□□□□ -2.3
RPL28P46779 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.66□□□□□ -2.3
RPL28P46779 AF131216.2-201ENST00000512316 564 ntBASIC0.66□□□□□ -2.3
RPL28P46779 RNU6-237P-201ENST00000515985 71 ntBASIC0.66□□□□□ -2.3
RPL28P46779 RNU6-1041P-201ENST00000516254 102 ntBASIC0.66□□□□□ -2.3
RPL28P46779 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.66□□□□□ -2.3
RPL28P46779 AL442163.3-201ENST00000554110 156 ntBASIC0.66□□□□□ -2.3
RPL28P46779 AL022345.2-201ENST00000606307 135 ntBASIC0.66□□□□□ -2.3
RPL28P46779 AC005520.5-201ENST00000613926 164 ntBASIC0.66□□□□□ -2.3
RPL28P46779 AC008147.4-201ENST00000617570 1204 ntBASIC0.66□□□□□ -2.3
RPL28P46779 AC091895.1-201ENST00000624494 256 ntBASIC0.66□□□□□ -2.3
RPL28P46779 RNU6-116P-201ENST00000384042 109 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AL356776.1-201ENST00000406574 447 ntBASIC0.65□□□□□ -2.31
RPL28P46779 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.65□□□□□ -2.31
RPL28P46779 GTF2IP13-201ENST00000438487 386 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AC067942.3-201ENST00000512025 362 ntBASIC0.65□□□□□ -2.31
RPL28P46779 SCARNA24.1-201ENST00000516465 137 ntBASIC0.65□□□□□ -2.31
RPL28P46779 RNA5SP503-201ENST00000517047 117 ntBASIC0.65□□□□□ -2.31
RPL28P46779 RNU6-1220P-201ENST00000517126 108 ntBASIC0.65□□□□□ -2.31
RPL28P46779 CYCSP23-201ENST00000519781 313 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.65□□□□□ -2.31
RPL28P46779 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.65□□□□□ -2.31
RPL28P46779 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC0.65□□□□□ -2.31
RPL28P46779 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.65□□□□□ -2.31
RPL28P46779 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.65□□□□□ -2.31
RPL28P46779 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.65□□□□□ -2.31
RPL28P46779 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.65□□□□□ -2.31
RPL28P46779 AC098848.2-201ENST00000588023 330 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AC107304.1-201ENST00000604229 296 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AL020996.3-201ENST00000606617 222 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AC009994.1-201ENST00000606889 253 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AC040896.1-201ENST00000613819 479 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AC126177.8-201ENST00000618339 1015 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AP002371.2-201ENST00000624450 503 ntBASIC0.65□□□□□ -2.31
RPL28P46779 AC099654.13-201ENST00000639774 207 ntBASIC0.65□□□□□ -2.31
RPL28P46779 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.64□□□□□ -2.31
RPL28P46779 MTND5P17-201ENST00000418405 1603 ntBASIC0.64□□□□□ -2.31
RPL28P46779 RNU6-534P-201ENST00000364877 106 ntBASIC0.64□□□□□ -2.31
RPL28P46779 SNORA4.2-201ENST00000365313 147 ntBASIC0.64□□□□□ -2.31
RPL28P46779 RNU6-1026P-201ENST00000384465 108 ntBASIC0.64□□□□□ -2.31
RPL28P46779 COX6CP10-201ENST00000416832 224 ntBASIC0.64□□□□□ -2.31
RPL28P46779 AL117339.3-201ENST00000418733 162 ntBASIC0.64□□□□□ -2.31
RPL28P46779 AC060773.1-201ENST00000421698 310 ntBASIC0.64□□□□□ -2.31
RPL28P46779 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.64□□□□□ -2.31
RPL28P46779 AC016632.1-201ENST00000503994 196 ntBASIC0.64□□□□□ -2.31
RPL28P46779 AC011406.1-201ENST00000512440 370 ntBASIC0.64□□□□□ -2.31
RPL28P46779 Y_RNA.672-201ENST00000516289 104 ntBASIC0.64□□□□□ -2.31
RPL28P46779 RNU6-165P-201ENST00000517170 99 ntBASIC0.64□□□□□ -2.31
RPL28P46779 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.64□□□□□ -2.31
RPL28P46779 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.64□□□□□ -2.31
RPL28P46779 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.64□□□□□ -2.31
RPL28P46779 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC0.64□□□□□ -2.31
RPL28P46779 CYP4A27P-201ENST00000567218 190 ntBASIC0.64□□□□□ -2.31
RPL28P46779 MIR4709-201ENST00000577272 72 ntBASIC0.64□□□□□ -2.31
RPL28P46779 MIR4742-201ENST00000581069 85 ntBASIC0.64□□□□□ -2.31
RPL28P46779 Z98751.3-201ENST00000604447 521 ntBASIC0.64□□□□□ -2.31
RPL28P46779 AC064872.1-201ENST00000604823 1072 ntBASIC0.64□□□□□ -2.31
RPL28P46779 SNORD114-21-201ENST00000606412 72 ntBASIC0.64□□□□□ -2.31
RPL28P46779 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.64□□□□□ -2.31
RPL28P46779 AC009159.2-201ENST00000617603 606 ntBASIC0.64□□□□□ -2.31
RPL28P46779 AC006927.3-201ENST00000638789 384 ntBASIC0.64□□□□□ -2.31
RPL28P46779 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.64□□□□□ -2.31
RPL28P46779 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
RPL28P46779 MIR337-201ENST00000362281 93 ntBASIC0.63□□□□□ -2.31
RPL28P46779 RNU6-552P-201ENST00000362869 119 ntBASIC0.63□□□□□ -2.31
RPL28P46779 SNORD113-6-201ENST00000363345 75 ntBASIC0.63□□□□□ -2.31
RPL28P46779 Y_RNA.132-201ENST00000363421 102 ntBASIC0.63□□□□□ -2.31
RPL28P46779 RNU6-1303P-201ENST00000364841 107 ntBASIC0.63□□□□□ -2.31
RPL28P46779 RNU6-715P-201ENST00000365204 103 ntBASIC0.63□□□□□ -2.31
RPL28P46779 RNU6-877P-201ENST00000383868 107 ntBASIC0.63□□□□□ -2.31
RPL28P46779 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
RPL28P46779 RNU6-550P-201ENST00000391057 101 ntBASIC0.63□□□□□ -2.31
RPL28P46779 Y_RNA.595-201ENST00000410403 105 ntBASIC0.63□□□□□ -2.31
RPL28P46779 AC013410.2-201ENST00000422627 201 ntBASIC0.63□□□□□ -2.31
RPL28P46779 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.63□□□□□ -2.31
RPL28P46779 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.63□□□□□ -2.31
RPL28P46779 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC0.63□□□□□ -2.31
RPL28P46779 AC002486.1-201ENST00000435098 391 ntBASIC0.63□□□□□ -2.31
RPL28P46779 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.63□□□□□ -2.31
RPL28P46779 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.63□□□□□ -2.31
RPL28P46779 AL512286.1-201ENST00000439244 400 ntBASIC0.63□□□□□ -2.31
RPL28P46779 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.63□□□□□ -2.31
RPL28P46779 AL009048.1-201ENST00000450437 298 ntBASIC0.63□□□□□ -2.31
RPL28P46779 RPS26P45-201ENST00000471748 340 ntBASIC0.63□□□□□ -2.31
RPL28P46779 AL163973.1-201ENST00000484753 577 ntBASIC0.63□□□□□ -2.31
RPL28P46779 RPS23P5-201ENST00000495419 428 ntBASIC0.63□□□□□ -2.31
RPL28P46779 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.63□□□□□ -2.31
RPL28P46779 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.63□□□□□ -2.31
RPL28P46779 RNA5SP384-201ENST00000516615 116 ntBASIC0.63□□□□□ -2.31
RPL28P46779 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.63□□□□□ -2.31
RPL28P46779 AL391646.1-201ENST00000603860 190 ntBASIC0.63□□□□□ -2.31
RPL28P46779 AL359821.1-201ENST00000605519 182 ntBASIC0.63□□□□□ -2.31
RPL28P46779 AC011155.2-201ENST00000623202 216 ntBASIC0.63□□□□□ -2.31
RPL28P46779 MIR338-201ENST00000636369 67 ntBASIC0.63□□□□□ -2.31
RPL28P46779 RNU6-1123P-201ENST00000362347 106 ntBASIC0.62□□□□□ -2.31
RPL28P46779 RNY1P12-201ENST00000364251 105 ntBASIC0.62□□□□□ -2.31
RPL28P46779 Y_RNA.338-201ENST00000365320 114 ntBASIC0.62□□□□□ -2.31
RPL28P46779 RNU6-169P-201ENST00000365336 107 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms