Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MIR4299-201ENST00000577899 72 ntBASIC1.61□□□□□ -2.15
SHMT2P34897 AL078605.1-201ENST00000603529 500 ntBASIC1.61□□□□□ -2.15
SHMT2P34897 AL356157.2-201ENST00000605122 111 ntBASIC1.61□□□□□ -2.15
SHMT2P34897 AC068944.2-201ENST00000610373 403 ntBASIC1.61□□□□□ -2.15
SHMT2P34897 Z99129.1-201ENST00000612510 255 ntBASIC1.61□□□□□ -2.15
SHMT2P34897 AC103705.1-201ENST00000619013 241 ntBASIC1.61□□□□□ -2.15
SHMT2P34897 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.61□□□□□ -2.15
SHMT2P34897 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.6□□□□□ -2.15
SHMT2P34897 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
SHMT2P34897 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SHMT2P34897 RNU6-1322P-201ENST00000364309 107 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 RNU6-259P-201ENST00000383999 107 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 RNU6-38P-201ENST00000384085 107 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 MTCYBP2-201ENST00000407745 171 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.6□□□□□ -2.15
SHMT2P34897 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.6□□□□□ -2.15
SHMT2P34897 AC078809.1-201ENST00000427601 140 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 AL133396.1-201ENST00000432048 687 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.6□□□□□ -2.15
SHMT2P34897 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.6□□□□□ -2.15
SHMT2P34897 TPTE2P5-203ENST00000458118 728 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 RNU6-333P-201ENST00000459117 107 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 RNU6-261P-201ENST00000459506 102 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
SHMT2P34897 RNU6-189P-201ENST00000516120 101 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 RNU6-991P-201ENST00000516168 107 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 RNU6-1038P-201ENST00000516516 104 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 RNU6-835P-201ENST00000516974 104 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.6□□□□□ -2.15
SHMT2P34897 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.6□□□□□ -2.15
SHMT2P34897 AC078795.3-201ENST00000602913 472 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.6□□□□□ -2.15
SHMT2P34897 SNORA43.4-201ENST00000629559 138 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
SHMT2P34897 MIR6863-201ENST00000636112 90 ntBASIC1.6□□□□□ -2.15
SHMT2P34897 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
SHMT2P34897 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
SHMT2P34897 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.59□□□□□ -2.15
SHMT2P34897 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
SHMT2P34897 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.59□□□□□ -2.15
SHMT2P34897 AC092268.1-201ENST00000342691 405 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 Y_RNA.99-201ENST00000363138 105 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 RNU6-82P-201ENST00000363970 107 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 Y_RNA.378-201ENST00000365652 113 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 SNORA69-201ENST00000383895 132 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 RNU6-1042P-201ENST00000384204 107 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 MIR597-201ENST00000384968 97 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 SNORD37.1-201ENST00000390968 65 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 RNU2-16P-201ENST00000410712 136 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 POLHP1-201ENST00000411806 470 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 AP000275.1-201ENST00000411943 390 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 RPS20P15-201ENST00000412792 311 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 AL158823.1-201ENST00000418441 478 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.59□□□□□ -2.15
SHMT2P34897 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.59□□□□□ -2.15
SHMT2P34897 MTCO2P3-201ENST00000442543 421 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 RPL23AP6-201ENST00000446637 472 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 AC245102.2-201ENST00000448956 180 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.59□□□□□ -2.15
SHMT2P34897 RPL39P5-202ENST00000512505 151 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 RNA5SP401-201ENST00000515920 127 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 MIR449C-201ENST00000516047 92 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 AP005597.4-201ENST00000526762 229 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.59□□□□□ -2.15
SHMT2P34897 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.59□□□□□ -2.15
SHMT2P34897 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.59□□□□□ -2.15
SHMT2P34897 AL353997.5-201ENST00000618886 171 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 AL359880.1-201ENST00000621879 266 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.59□□□□□ -2.15
SHMT2P34897 OR5AK4P-201ENST00000635912 903 ntBASIC1.59□□□□□ -2.15
SHMT2P34897 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
SHMT2P34897 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.59□□□□□ -2.16
SHMT2P34897 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
SHMT2P34897 RNU1-58P-201ENST00000362413 163 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 Y_RNA.167-201ENST00000363735 109 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 SNORA36A-201ENST00000384221 132 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 MIR514A2-201ENST00000385131 88 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 MIR514A3-201ENST00000385132 88 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 RNU6-482P-201ENST00000391068 107 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 MTCO3P40-201ENST00000392516 676 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 CALM2P3-201ENST00000400429 449 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 RNU6-648P-201ENST00000410190 107 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.58□□□□□ -2.16
SHMT2P34897 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.58□□□□□ -2.16
SHMT2P34897 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.58□□□□□ -2.16
SHMT2P34897 MTND2P22-201ENST00000444325 1033 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.58□□□□□ -2.16
SHMT2P34897 SNORD13-201ENST00000459299 104 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 AC016632.1-201ENST00000503994 196 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.58□□□□□ -2.16
SHMT2P34897 RNU6-1069P-201ENST00000516612 133 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 CBX3P4-201ENST00000538909 354 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 AC243960.4-201ENST00000600532 288 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 AC092747.3-201ENST00000603769 301 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 AP000654.2-201ENST00000605633 586 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 AL158209.2-201ENST00000619266 216 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 MTND4P23-201ENST00000447723 1363 ntBASIC1.58□□□□□ -2.16
SHMT2P34897 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
SHMT2P34897 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms