Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC018889.1-201ENST00000605372 397 ntBASIC1.95□□□□□ -2.1
PTPN4P29074 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
PTPN4P29074 ZNF72P-201ENST00000425869 1908 ntBASIC1.95□□□□□ -2.1
PTPN4P29074 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
PTPN4P29074 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
PTPN4P29074 Y_RNA.6-201ENST00000362350 114 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 RNA5SP99-201ENST00000364020 114 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 Y_RNA.256-201ENST00000364594 104 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 RNU4-12P-201ENST00000365233 139 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 U8.13-201ENST00000390842 128 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC019129.1-201ENST00000403786 261 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 RNA5SP450-201ENST00000411206 102 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 SRIP3-201ENST00000413200 219 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC078809.1-201ENST00000427601 140 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC027124.2-201ENST00000428249 105 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 ERLEC1P1-201ENST00000433806 578 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.94□□□□□ -2.1
PTPN4P29074 AC243964.1-201ENST00000441814 261 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.94□□□□□ -2.1
PTPN4P29074 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.94□□□□□ -2.1
PTPN4P29074 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.94□□□□□ -2.1
PTPN4P29074 RPL23AP3-201ENST00000453844 468 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.94□□□□□ -2.1
PTPN4P29074 MTND1P35-201ENST00000526739 508 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC103996.1-201ENST00000555468 102 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 MIR4299-201ENST00000577899 72 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 BNIP3P25-201ENST00000596023 559 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AL121757.2-201ENST00000611223 313 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC090517.2-201ENST00000614966 680 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AL353997.5-201ENST00000618886 171 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC098679.4-201ENST00000624241 654 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC121333.1-201ENST00000567488 2709 ntBASIC1.94□□□□□ -2.1
PTPN4P29074 AC092268.1-201ENST00000342691 405 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 RNU6-1285P-201ENST00000363480 105 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 RNU6-142P-201ENST00000384019 107 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 SNORD73A-201ENST00000386062 65 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
PTPN4P29074 SNORA26.9-201ENST00000391322 122 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 AL033519.2-201ENST00000403958 392 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 MIR548F1-201ENST00000408667 84 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 RNU2-2P-201ENST00000410396 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 RNU6-293P-201ENST00000411259 106 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.93□□□□□ -2.1
PTPN4P29074 AC096920.1-201ENST00000423991 241 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 RPS15AP10-201ENST00000432472 382 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.93□□□□□ -2.1
PTPN4P29074 SNORA19.2-201ENST00000516013 114 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 Y_RNA.665-201ENST00000516177 98 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 RNU6-567P-201ENST00000516746 107 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 MTND1P5-201ENST00000517906 940 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.93□□□□□ -2.1
PTPN4P29074 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.93□□□□□ -2.1
PTPN4P29074 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.93□□□□□ -2.1
PTPN4P29074 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.93□□□□□ -2.1
PTPN4P29074 MIR5692C1-201ENST00000585309 91 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.15-201ENST00000611544 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.16-201ENST00000613119 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.12-201ENST00000613778 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.20-201ENST00000613956 192 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.9-201ENST00000615427 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.11-201ENST00000616345 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.2-201ENST00000616535 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.3-201ENST00000617785 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.19-201ENST00000618602 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 RNU2-1-201ENST00000618664 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.6-201ENST00000619225 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.5-201ENST00000619465 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 U2.10-201ENST00000620268 191 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.93□□□□□ -2.1
PTPN4P29074 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
PTPN4P29074 RNU6-692P-201ENST00000384496 107 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 RNU6-192P-201ENST00000391253 100 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 EIF4E2P1-201ENST00000393781 255 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 RN7SKP61-201ENST00000410642 295 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 SNRPEP10-201ENST00000420249 274 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.92□□□□□ -2.1
PTPN4P29074 MRPS10P2-201ENST00000431226 381 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 MTND2P29-201ENST00000438595 412 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 AC007677.1-201ENST00000445757 515 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 HMGN2P23-201ENST00000456759 269 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 HMGN2P26-201ENST00000463169 339 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.92□□□□□ -2.1
PTPN4P29074 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.92□□□□□ -2.1
PTPN4P29074 AK3P2-201ENST00000507976 429 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.92□□□□□ -2.1
PTPN4P29074 RNU6-323P-201ENST00000521915 107 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 AP005597.4-201ENST00000526762 229 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.92□□□□□ -2.1
PTPN4P29074 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.92□□□□□ -2.1
PTPN4P29074 AL357078.3-201ENST00000607528 618 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 RMST_3.1-201ENST00000611651 109 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 AL773524.1-201ENST00000614065 229 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.92□□□□□ -2.1
PTPN4P29074 AC024614.3-201ENST00000637860 256 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 AC073869.6-201ENST00000640656 341 ntBASIC1.92□□□□□ -2.1
PTPN4P29074 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
PTPN4P29074 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.91□□□□□ -2.1
PTPN4P29074 Y_RNA.89-201ENST00000363031 102 ntBASIC1.91□□□□□ -2.1
PTPN4P29074 RNA5SP465-201ENST00000391195 109 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 186.5 ms