Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
HMGB3O15347 RNU6-1026P-201ENST00000384465 108 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 SNORA26.3-201ENST00000391119 136 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 RPL21P1-201ENST00000399532 476 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.36□□□□□ -2.35
HMGB3O15347 C1DP2-201ENST00000418167 426 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.36□□□□□ -2.35
HMGB3O15347 AL035398.1-201ENST00000430869 322 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 C1DP4-201ENST00000455429 424 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 AC105758.1-201ENST00000506038 399 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC0.36□□□□□ -2.35
HMGB3O15347 RNU6-1003P-201ENST00000517099 105 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC0.36□□□□□ -2.35
HMGB3O15347 AC092451.2-201ENST00000538746 658 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC0.36□□□□□ -2.35
HMGB3O15347 AL929325.1-201ENST00000603096 117 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 AP000942.3-201ENST00000603702 160 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 AC016727.2-201ENST00000603988 621 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 GHRLOS.1-201ENST00000610995 70 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC0.36□□□□□ -2.35
HMGB3O15347 AP000943.4-201ENST00000622912 357 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 AC005858.4-201ENST00000623191 700 ntBASIC0.36□□□□□ -2.35
HMGB3O15347 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
HMGB3O15347 RNA5SP347-201ENST00000362445 119 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 SNORA63.3-201ENST00000362682 132 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 RNU6-950P-201ENST00000384651 107 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 RNU6-1031P-201ENST00000384773 107 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 RNU2-3P-201ENST00000410144 191 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.35□□□□□ -2.35
HMGB3O15347 MTND1P12-201ENST00000455231 147 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 AL162395.1-201ENST00000457882 422 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 AL163973.1-201ENST00000484753 577 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 RPS23P5-201ENST00000495419 428 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 AC034244.1-201ENST00000507687 207 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 AF131216.2-201ENST00000512316 564 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC0.35□□□□□ -2.35
HMGB3O15347 RNU2-34P-201ENST00000516534 121 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.35□□□□□ -2.35
HMGB3O15347 AC091489.2-201ENST00000566263 604 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.35□□□□□ -2.35
HMGB3O15347 AL606834.3-201ENST00000602615 496 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 AL031281.1-201ENST00000604049 488 ntBASIC0.35□□□□□ -2.35
HMGB3O15347 SNORA33-201ENST00000363664 130 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 RNA5SP499-201ENST00000363982 119 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 RNU6-418P-201ENST00000384035 107 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 RNU6-378P-201ENST00000384324 107 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 RNU6-692P-201ENST00000384496 107 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 RPS20P2-201ENST00000402520 389 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 AC114491.1-201ENST00000416095 246 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 Z82205.1-201ENST00000428456 297 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.34□□□□□ -2.36
HMGB3O15347 AC113410.1-201ENST00000505029 247 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 AC010587.2-201ENST00000511727 448 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 MIR5692A1-201ENST00000580523 69 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 MIR4307-201ENST00000582802 84 ntBASIC0.34□□□□□ -2.36
HMGB3O15347 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
HMGB3O15347 U3.4-201ENST00000363352 213 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 RNU6-505P-201ENST00000384427 107 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 AL136310.1-201ENST00000404926 654 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 RNU6-293P-201ENST00000411259 106 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 RNU6-607P-201ENST00000411283 108 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.33□□□□□ -2.36
HMGB3O15347 AC244023.1-201ENST00000426884 112 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 AL358794.1-201ENST00000445689 381 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC0.33□□□□□ -2.36
HMGB3O15347 AC104982.1-201ENST00000478775 574 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 AP000797.1-201ENST00000478870 387 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 RNU6-229P-201ENST00000516614 102 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 RNU6-922P-201ENST00000516753 99 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 AP001893.2-201ENST00000526949 202 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.33□□□□□ -2.36
HMGB3O15347 HSPE1P4-201ENST00000550617 308 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.33□□□□□ -2.36
HMGB3O15347 MIR3118-1-201ENST00000581787 76 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 AC242498.1-201ENST00000604134 111 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 AL356157.2-201ENST00000605122 111 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 AC243994.1-201ENST00000618627 109 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.33□□□□□ -2.36
HMGB3O15347 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.33□□□□□ -2.36
HMGB3O15347 AC092268.1-201ENST00000342691 405 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 MIR96-201ENST00000362288 78 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 snoU2-30.2-201ENST00000362805 70 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 SNORD32A-201ENST00000364805 84 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 RNU6-392P-201ENST00000364926 101 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 RNA5SP109-201ENST00000391010 116 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.32□□□□□ -2.36
HMGB3O15347 CALM2P2-201ENST00000428512 440 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 RNU7-21P-201ENST00000459430 62 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 MTND3P25-201ENST00000509243 135 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 SNORA31.10-201ENST00000516482 106 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 TMF1P1-201ENST00000576058 373 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 AC078795.3-201ENST00000602913 472 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 AL390123.1-201ENST00000603216 237 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 AC116165.2-201ENST00000616705 206 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
HMGB3O15347 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.32□□□□□ -2.36
HMGB3O15347 U3.8-201ENST00000363675 217 ntBASIC0.31□□□□□ -2.36
HMGB3O15347 RNU6-945P-201ENST00000383947 107 ntBASIC0.31□□□□□ -2.36
HMGB3O15347 Y_RNA.465-201ENST00000384293 102 ntBASIC0.31□□□□□ -2.36
HMGB3O15347 SNORD116-12-201ENST00000384468 92 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms