Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CBX4O00257 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.34□□□□□ -1.87
CBX4O00257 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CBX4O00257 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CBX4O00257 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CBX4O00257 Y_RNA.401-201ENST00000383965 117 ntBASIC3.34□□□□□ -1.87
CBX4O00257 MIR10B-201ENST00000385011 110 ntBASIC3.34□□□□□ -1.87
CBX4O00257 AL357075.1-201ENST00000404107 726 ntBASIC3.34□□□□□ -1.87
CBX4O00257 MIR320B2-201ENST00000408479 138 ntBASIC3.34□□□□□ -1.87
CBX4O00257 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.34□□□□□ -1.87
CBX4O00257 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.34□□□□□ -1.87
CBX4O00257 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.34□□□□□ -1.87
CBX4O00257 IPO7P1-201ENST00000442031 636 ntBASIC3.34□□□□□ -1.87
CBX4O00257 DYNLT3P2-201ENST00000442517 295 ntBASIC3.34□□□□□ -1.87
CBX4O00257 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.34□□□□□ -1.87
CBX4O00257 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.34□□□□□ -1.87
CBX4O00257 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.34□□□□□ -1.87
CBX4O00257 RN7SL330P-201ENST00000469709 307 ntBASIC3.34□□□□□ -1.87
CBX4O00257 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.34□□□□□ -1.87
CBX4O00257 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.34□□□□□ -1.87
CBX4O00257 SCARNA17.1-201ENST00000516211 143 ntBASIC3.34□□□□□ -1.87
CBX4O00257 RNA5SP341-201ENST00000516261 117 ntBASIC3.34□□□□□ -1.87
CBX4O00257 RNY3P15-201ENST00000516297 97 ntBASIC3.34□□□□□ -1.87
CBX4O00257 SCARNA17.2-201ENST00000516334 143 ntBASIC3.34□□□□□ -1.87
CBX4O00257 SCARNA11.3-201ENST00000517276 130 ntBASIC3.34□□□□□ -1.87
CBX4O00257 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.34□□□□□ -1.87
CBX4O00257 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.34□□□□□ -1.87
CBX4O00257 AC103810.1-201ENST00000579873 453 ntBASIC3.34□□□□□ -1.87
CBX4O00257 AL670379.2-201ENST00000604983 252 ntBASIC3.34□□□□□ -1.87
CBX4O00257 AC005520.5-201ENST00000613926 164 ntBASIC3.34□□□□□ -1.87
CBX4O00257 SCARNA17.4-201ENST00000614296 143 ntBASIC3.34□□□□□ -1.87
CBX4O00257 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.34□□□□□ -1.87
CBX4O00257 AC093010.3-201ENST00000570269 15214 ntBASIC3.34□□□□□ -1.87
CBX4O00257 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.34□□□□□ -1.88
CBX4O00257 AC103988.1-201ENST00000566382 2177 ntBASIC3.34□□□□□ -1.88
CBX4O00257 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
CBX4O00257 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.33□□□□□ -1.88
CBX4O00257 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CBX4O00257 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
CBX4O00257 AL021368.2-201ENST00000606125 5352 ntBASIC3.33□□□□□ -1.88
CBX4O00257 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CBX4O00257 RNU6-486P-201ENST00000363116 107 ntBASIC3.33□□□□□ -1.88
CBX4O00257 RNU6-702P-201ENST00000364982 107 ntBASIC3.33□□□□□ -1.88
CBX4O00257 RNU6-26P-201ENST00000383985 107 ntBASIC3.33□□□□□ -1.88
CBX4O00257 Y_RNA.439-201ENST00000384119 94 ntBASIC3.33□□□□□ -1.88
CBX4O00257 Y_RNA.458-201ENST00000384240 102 ntBASIC3.33□□□□□ -1.88
CBX4O00257 RNU6-611P-201ENST00000384276 104 ntBASIC3.33□□□□□ -1.88
CBX4O00257 MIR487A-201ENST00000385009 80 ntBASIC3.33□□□□□ -1.88
CBX4O00257 RPL21P1-201ENST00000399532 476 ntBASIC3.33□□□□□ -1.88
CBX4O00257 CBX3P9-201ENST00000402326 552 ntBASIC3.33□□□□□ -1.88
CBX4O00257 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.33□□□□□ -1.88
CBX4O00257 AC006028.1-201ENST00000438379 402 ntBASIC3.33□□□□□ -1.88
CBX4O00257 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.33□□□□□ -1.88
CBX4O00257 AL731563.1-201ENST00000442202 214 ntBASIC3.33□□□□□ -1.88
CBX4O00257 RPS29P12-201ENST00000460178 152 ntBASIC3.33□□□□□ -1.88
CBX4O00257 RPL31P41-201ENST00000477967 372 ntBASIC3.33□□□□□ -1.88
CBX4O00257 AC010469.2-201ENST00000496412 480 ntBASIC3.33□□□□□ -1.88
CBX4O00257 AC067942.3-201ENST00000512025 362 ntBASIC3.33□□□□□ -1.88
CBX4O00257 RNU6-897P-201ENST00000517135 105 ntBASIC3.33□□□□□ -1.88
CBX4O00257 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.33□□□□□ -1.88
CBX4O00257 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.33□□□□□ -1.88
CBX4O00257 AC093023.1-201ENST00000547375 507 ntBASIC3.33□□□□□ -1.88
CBX4O00257 UBL5P4-201ENST00000562584 236 ntBASIC3.33□□□□□ -1.88
CBX4O00257 Y_RNA.772-201ENST00000606692 102 ntBASIC3.33□□□□□ -1.88
CBX4O00257 AC130454.1-201ENST00000622948 401 ntBASIC3.33□□□□□ -1.88
CBX4O00257 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CBX4O00257 AC026241.1-201ENST00000517873 2142 ntBASIC3.32□□□□□ -1.88
CBX4O00257 AC099654.7-201ENST00000635788 2127 ntBASIC3.32□□□□□ -1.88
CBX4O00257 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CBX4O00257 Y_RNA.183-201ENST00000363882 113 ntBASIC3.32□□□□□ -1.88
CBX4O00257 RNU6-770P-201ENST00000363929 105 ntBASIC3.32□□□□□ -1.88
CBX4O00257 Y_RNA.214-201ENST00000364201 112 ntBASIC3.32□□□□□ -1.88
CBX4O00257 ELOCP20-201ENST00000422460 345 ntBASIC3.32□□□□□ -1.88
CBX4O00257 BX679664.1-201ENST00000434429 253 ntBASIC3.32□□□□□ -1.88
CBX4O00257 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.32□□□□□ -1.88
CBX4O00257 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.32□□□□□ -1.88
CBX4O00257 RPS3P1-201ENST00000456781 192 ntBASIC3.32□□□□□ -1.88
CBX4O00257 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.32□□□□□ -1.88
CBX4O00257 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.32□□□□□ -1.88
CBX4O00257 NDUFB9P3-201ENST00000521269 501 ntBASIC3.32□□□□□ -1.88
CBX4O00257 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.32□□□□□ -1.88
CBX4O00257 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
CBX4O00257 AC008739.2-201ENST00000597006 317 ntBASIC3.32□□□□□ -1.88
CBX4O00257 AL356575.1-201ENST00000603008 283 ntBASIC3.32□□□□□ -1.88
CBX4O00257 U6.104-201ENST00000637979 90 ntBASIC3.32□□□□□ -1.88
CBX4O00257 RNU6-281P-201ENST00000384212 103 ntBASIC3.31□□□□□ -1.88
CBX4O00257 Y_RNA.500-201ENST00000384466 111 ntBASIC3.31□□□□□ -1.88
CBX4O00257 RNA5SP213-201ENST00000391031 106 ntBASIC3.31□□□□□ -1.88
CBX4O00257 AL512633.1-201ENST00000399931 655 ntBASIC3.31□□□□□ -1.88
CBX4O00257 ARF4P2-201ENST00000430209 526 ntBASIC3.31□□□□□ -1.88
CBX4O00257 AL445305.1-201ENST00000432577 575 ntBASIC3.31□□□□□ -1.88
CBX4O00257 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.31□□□□□ -1.88
CBX4O00257 CST9LP2-201ENST00000437612 320 ntBASIC3.31□□□□□ -1.88
CBX4O00257 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.31□□□□□ -1.88
CBX4O00257 RPL27AP5-201ENST00000469428 449 ntBASIC3.31□□□□□ -1.88
CBX4O00257 AC021205.2-201ENST00000480069 347 ntBASIC3.31□□□□□ -1.88
CBX4O00257 RPL23AP70-201ENST00000483361 460 ntBASIC3.31□□□□□ -1.88
CBX4O00257 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.31□□□□□ -1.88
CBX4O00257 SEM1P1-201ENST00000506694 209 ntBASIC3.31□□□□□ -1.88
CBX4O00257 IGHV3-76-201ENST00000522465 295 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms