Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SNORD32A-201ENST00000364805 84 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 SNRPEP10-201ENST00000420249 274 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 AC007677.1-201ENST00000445757 515 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 AC079804.2-201ENST00000490376 200 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU5F-2P-201ENST00000516066 82 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU6-295P-201ENST00000516901 104 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 MTND1P5-201ENST00000517906 940 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 BNIP3P25-201ENST00000596023 559 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 AC016727.1-205ENST00000605437 569 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 AC009318.2-201ENST00000610917 651 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 AC024614.3-201ENST00000637860 256 ntBASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.14□□□□□ -2.07
PCDHGA1Q9Y5H4 AL359851.1-201ENST00000569460 4997 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 Y_RNA.6-201ENST00000362350 114 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU4-12P-201ENST00000365233 139 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU6-1274P-201ENST00000384557 107 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 U8.13-201ENST00000390842 128 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU6-1106P-201ENST00000390845 107 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AL512604.1-201ENST00000404812 257 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 SRIP3-201ENST00000413200 219 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 RPS15AP10-201ENST00000432472 382 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU6-1037P-201ENST00000459571 107 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 HMGN2P26-201ENST00000463169 339 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AC083904.1-201ENST00000487828 231 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AC025423.5-201ENST00000550230 219 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AC008749.1-201ENST00000597650 306 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AC068790.6-201ENST00000602558 258 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AC005034.5-201ENST00000604219 466 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AP001836.1-201ENST00000604675 523 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AC064836.2-201ENST00000609491 462 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 AP000560.1-201ENST00000624150 1937 ntBASIC2.13□□□□□ -2.07
PCDHGA1Q9Y5H4 Y_RNA.238-201ENST00000364441 102 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU4-56P-201ENST00000364700 142 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 Y_RNA.373-201ENST00000365600 103 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU6-1329P-201ENST00000365664 107 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 SNORA51.11-201ENST00000384442 131 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 SNORA48.3-201ENST00000391081 134 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 Y_RNA.615-201ENST00000410769 117 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 HMGB3P2-201ENST00000411913 584 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 RPL23AP95-201ENST00000426806 265 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC078809.1-201ENST00000427601 140 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 WARS2P1-201ENST00000429678 537 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 MRPS10P2-201ENST00000431226 381 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC244670.1-201ENST00000436879 112 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AL359672.1-201ENST00000442302 409 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC132942.1-201ENST00000486753 483 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 HMGB1P35-201ENST00000503360 598 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 Y_RNA.665-201ENST00000516177 98 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC007375.1-201ENST00000554513 578 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC233702.2-202ENST00000562547 291 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 MIR4287-201ENST00000579398 78 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC100830.2-201ENST00000581636 240 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 MIR3136-201ENST00000583498 78 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC018889.1-201ENST00000605372 397 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC104458.1-201ENST00000608243 463 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 RMST_3.1-201ENST00000611651 109 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC090517.2-201ENST00000614966 680 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC009831.4-201ENST00000620744 325 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC073869.6-201ENST00000640656 341 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 AC005336.3-201ENST00000623833 2679 ntBASIC2.12□□□□□ -2.07
PCDHGA1Q9Y5H4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 snoU2_19.1-201ENST00000362361 80 ntBASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 Y_RNA.89-201ENST00000363031 102 ntBASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU6-254P-201ENST00000363377 107 ntBASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 MIR518A2-201ENST00000384966 87 ntBASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 RNU6-332P-201ENST00000391193 108 ntBASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 MIR450B-201ENST00000401182 78 ntBASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 MIR548F1-201ENST00000408667 84 ntBASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 RN7SKP61-201ENST00000410642 295 ntBASIC2.11□□□□□ -2.07
PCDHGA1Q9Y5H4 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms