Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 Y_RNA.509-201ENST00000384506 99 ntBASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 SNORA41-201ENST00000384675 132 ntBASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 SNORA46.1-201ENST00000391069 153 ntBASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 MTCYBP2-201ENST00000407745 171 ntBASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 RNA5SP492-201ENST00000411330 114 ntBASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 AC011816.1-201ENST00000441346 546 ntBASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 MTCO3P10-201ENST00000455912 772 ntBASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 AC093303.1-201ENST00000514549 295 ntBASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 RNU7-175P-201ENST00000515915 61 ntBASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 RNY1P16-201ENST00000363063 111 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 U3.9-201ENST00000363823 204 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 Y_RNA.431-201ENST00000384086 102 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 RNU6-890P-201ENST00000384121 107 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 MIR196B-201ENST00000384852 84 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 RNU6-700P-201ENST00000391043 107 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 Y_RNA.597-201ENST00000410463 100 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 RPL21P2-201ENST00000440049 481 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 snoU13.30-201ENST00000458951 104 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 RNU7-26P-201ENST00000458980 63 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 UBL5P3-201ENST00000475112 231 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 AC090096.1-201ENST00000489168 390 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 HSPE1P20-201ENST00000538133 289 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 MIR4769-201ENST00000584126 77 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 AC005014.2-201ENST00000607795 599 ntBASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC9Q9Y3X0 AC017071.1-201ENST00000564407 2204 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 MIR95-201ENST00000385072 81 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 RNU6-1093P-201ENST00000391194 107 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 RNA5SP201-201ENST00000410316 124 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 RNU6-55P-201ENST00000411092 107 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 OR2AQ1P-201ENST00000451972 200 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 ELOCP24-201ENST00000456370 334 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 AC008413.1-201ENST00000511864 177 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 SNORA48.11-201ENST00000517015 89 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 MIR4524B-201ENST00000581569 115 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 MTND5P10-201ENST00000603719 1809 ntBASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC9Q9Y3X0 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 SNORA18.3-201ENST00000384122 132 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 MIR32-201ENST00000384965 70 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 RPS26P42-201ENST00000413485 326 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 AC063976.3-201ENST00000426849 329 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 RPL30P10-201ENST00000488148 337 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 AC083906.5-201ENST00000503722 328 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 HSPE1P18-201ENST00000517602 280 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 MIR4425-201ENST00000580572 84 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 AC078899.3-201ENST00000599065 212 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 RMST_6.1-201ENST00000611980 203 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 PCGEM1.1-201ENST00000613431 131 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 AC005520.5-201ENST00000613926 164 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 AC244205.2-202ENST00000635781 342 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 AC135776.4-201ENST00000624300 1904 ntBASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC9Q9Y3X0 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 Y_RNA.11-201ENST00000362375 109 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 Y_RNA.146-201ENST00000363549 102 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 SNORD115-32-201ENST00000364079 82 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 Y_RNA.315-201ENST00000365117 102 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 RNU6-378P-201ENST00000384324 107 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 RNA5SP229-201ENST00000410809 99 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 Z82188.1-201ENST00000436709 154 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 AP000705.1-201ENST00000454567 350 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 AC068781.1-201ENST00000488231 618 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 RPL17P19-201ENST00000489069 552 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.09□□□□□ -1.75
CCDC9Q9Y3X0 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
CCDC9Q9Y3X0 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
CCDC9Q9Y3X0 SNORA38-201ENST00000363946 132 ntBASIC4.08□□□□□ -1.76
CCDC9Q9Y3X0 SNORA70B-201ENST00000384210 135 ntBASIC4.08□□□□□ -1.76
CCDC9Q9Y3X0 MIR153-2-201ENST00000385225 87 ntBASIC4.08□□□□□ -1.76
CCDC9Q9Y3X0 snosnR66.1-201ENST00000391095 99 ntBASIC4.08□□□□□ -1.76
CCDC9Q9Y3X0 MTND5P27-201ENST00000428871 1720 ntBASIC4.08□□□□□ -1.76
CCDC9Q9Y3X0 AC079600.2-201ENST00000550076 130 ntBASIC4.08□□□□□ -1.76
CCDC9Q9Y3X0 EIF4A1P12-201ENST00000551910 141 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 232.9 ms