Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 HSPE1P4-201ENST00000550617 308 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 MTCO3P23-201ENST00000561363 289 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 MIR3945-201ENST00000581853 98 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 BNIP3P16-201ENST00000589779 534 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 AC073648.5-201ENST00000603502 305 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 AC018889.1-201ENST00000605372 397 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 AL022345.1-201ENST00000607292 135 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 AC007684.1-201ENST00000609671 477 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 AC109347.2-201ENST00000610220 349 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 AC022079.1-201ENST00000621546 602 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
EXOSC4Q9NPD3 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-996P-201ENST00000365438 107 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-517P-201ENST00000384362 110 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 SNORD73A-201ENST00000386062 65 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-1158P-201ENST00000391167 107 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 RPS29P13-201ENST00000402041 169 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 AC090960.1-201ENST00000421072 306 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 MTCO2P19-201ENST00000427513 598 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 MTCO2P16-201ENST00000436962 677 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 AC073415.1-201ENST00000449240 153 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 HMGN2P18-201ENST00000450680 270 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 RNU7-63P-201ENST00000459054 62 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 RNU7-167P-201ENST00000459160 62 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 RNU7-180P-201ENST00000459240 63 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 snoU13.15-201ENST00000459407 104 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 GMFBP1-201ENST00000467831 427 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 AC010424.1-201ENST00000506336 297 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 CCDC34P1-201ENST00000507441 517 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 RPL39P5-202ENST00000512505 151 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 AC109446.1-201ENST00000566172 220 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 AC078795.3-201ENST00000602913 472 ntBASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.31□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-1141P-201ENST00000364520 107 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 Y_RNA.399-201ENST00000383955 105 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-142P-201ENST00000384019 107 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 SNORA36A-201ENST00000384221 132 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 MIR30A-201ENST00000385092 71 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 SNORA48.1-201ENST00000390879 135 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AL513185.2-201ENST00000425543 193 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AC073464.1-201ENST00000429823 534 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 SNAP23P1-201ENST00000433229 246 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AL606489.2-201ENST00000433886 234 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AC002486.1-201ENST00000435098 391 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AL121601.2-201ENST00000438019 707 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AC007677.1-201ENST00000445757 515 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 snoU13.26-201ENST00000459452 105 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 RPS3AP17-201ENST00000472594 777 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AC010486.3-201ENST00000511602 785 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-1038P-201ENST00000516516 104 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 SNORD53B-201ENST00000577887 78 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AC012507.3-201ENST00000603556 477 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AP000654.2-201ENST00000605633 586 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 U2.17-201ENST00000611454 95 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 HULC.1-201ENST00000612720 240 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 AL590240.4-201ENST00000616908 390 ntBASIC1.3□□□□□ -2.2
EXOSC4Q9NPD3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 RNA5SP493-201ENST00000364115 91 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 Y_RNA.504-201ENST00000384481 104 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 DEFB108C-201ENST00000400154 252 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AL358453.1-201ENST00000422522 250 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 MTATP6P17-201ENST00000431030 672 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 TPT1P7-201ENST00000458300 517 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AL163973.1-201ENST00000484753 577 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AC022447.4-201ENST00000504053 364 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 FAM206BP-201ENST00000510179 541 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AC010493.1-201ENST00000513479 292 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 RNA5SP490-201ENST00000517141 136 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AP005597.4-201ENST00000526762 229 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 MIR3683-201ENST00000580847 82 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 CYP2C61P-201ENST00000604072 290 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 179.9 ms