Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC007395.1-201ENST00000451333 677 ntBASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 AC106707.2-201ENST00000484182 374 ntBASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 AC074133.1-201ENST00000515696 183 ntBASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 AL355297.2-201ENST00000604792 129 ntBASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 SNORA62.6-201ENST00000606322 83 ntBASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 AL591424.2-201ENST00000617023 128 ntBASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 U7.8-201ENST00000619968 63 ntBASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
TRAIPQ9BWF2 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 Y_RNA.19-201ENST00000362462 99 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 RNU6-727P-201ENST00000363592 107 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 SNORD32B-201ENST00000364460 84 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 SNORA70.4-201ENST00000365509 134 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 Y_RNA.498-201ENST00000384460 102 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 AL035423.1-201ENST00000420331 213 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 AC104332.2-201ENST00000429959 156 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 DYNLT3P2-201ENST00000442517 295 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 IFNA11P-201ENST00000446352 526 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 SNORA40.9-201ENST00000515895 93 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 RNU6-344P-201ENST00000516635 111 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 AC023824.2-201ENST00000566185 400 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 AC011476.5-201ENST00000615594 130 ntBASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
TRAIPQ9BWF2 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 SNORA63.1-201ENST00000362493 131 ntBASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 RNU6-1180P-201ENST00000364935 107 ntBASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 ATP5A1P2-201ENST00000412323 255 ntBASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 Z82209.1-201ENST00000422141 2135 ntBASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 AC091179.3-201ENST00000474761 144 ntBASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 AL161670.1-201ENST00000554348 137 ntBASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 MZT1P2-201ENST00000604387 248 ntBASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.11□□□□□ -1.75
TRAIPQ9BWF2 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 MIR208A-201ENST00000362287 71 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 RNU1-72P-201ENST00000362976 153 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 Y_RNA.214-201ENST00000364201 112 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 RNA5SP51-201ENST00000364750 119 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 RNU6-546P-201ENST00000383991 107 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 Y_RNA.556-201ENST00000384677 113 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 U3.39-201ENST00000408569 239 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 AC093578.1-201ENST00000415219 368 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 AL445687.1-201ENST00000439946 251 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 RN7SL93P-201ENST00000463035 293 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 RNU6-408P-201ENST00000515910 100 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 RNU6-107P-201ENST00000516643 102 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 RNU1-117P-201ENST00000517041 158 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 AC019176.2-201ENST00000611579 315 ntBASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.1□□□□□ -1.75
TRAIPQ9BWF2 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 Z83843.1-201ENST00000604070 3685 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 Y_RNA.143-201ENST00000363520 106 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 SNORA72.2-201ENST00000365028 127 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 SET-203ENST00000372688 801 ntTSL 2 BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 RPL21P1-201ENST00000399532 476 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 AL079342.1-201ENST00000401460 267 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 ELOCP20-201ENST00000422460 345 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 SNORD105B-201ENST00000458770 79 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 RNU6-625P-201ENST00000459412 107 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 RN7SKP18-201ENST00000516005 275 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 AC022695.1-201ENST00000522089 237 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 AC090877.1-201ENST00000561418 344 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 AC023043.3-201ENST00000593113 385 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 AL137849.1-201ENST00000604767 169 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 MIR376A1-201ENST00000616574 68 ntBASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 NAA50-211ENST00000630058 177 ntTSL 5 BASIC4.09□□□□□ -1.75
TRAIPQ9BWF2 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.09□□□□□ -1.76
TRAIPQ9BWF2 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 139.7 ms