Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU1-104P-201ENST00000517280 175 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC078795.3-201ENST00000602913 472 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 AL132765.2-201ENST00000610812 351 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC112487.2-201ENST00000637950 304 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
NKX3-1Q99801 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 MIR21-201ENST00000362134 72 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 Y_RNA.48-201ENST00000362710 103 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 RNU6-1210P-201ENST00000363775 107 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 Y_RNA.356-201ENST00000365475 113 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 RNU6-1009P-201ENST00000390996 107 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 RN7SKP61-201ENST00000410642 295 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 AC007064.1-201ENST00000412238 351 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 CYCSP48-201ENST00000417124 323 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 SNRPEP8-201ENST00000442866 260 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 AC104389.3-201ENST00000445629 235 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 AC080013.2-201ENST00000460866 323 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 HMGB1P35-201ENST00000503360 598 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 Y_RNA.670-201ENST00000516255 105 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 RNA5SP82-201ENST00000516707 92 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 CBX3P7-201ENST00000532876 502 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 AC063943.3-201ENST00000615562 356 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 SNORD98-201ENST00000636377 67 ntBASIC2.14□□□□□ -2.07
NKX3-1Q99801 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
NKX3-1Q99801 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.14□□□□□ -2.07
NKX3-1Q99801 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
NKX3-1Q99801 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
NKX3-1Q99801 RNU4-15P-201ENST00000362613 141 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 RNU5E-4P-201ENST00000364931 120 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 RNU6-601P-201ENST00000384540 107 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 RNU6-1072P-201ENST00000384703 107 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 RNU6-443P-201ENST00000384780 107 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 MIR9-1-201ENST00000385198 89 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 CBX3P9-201ENST00000402326 552 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 RNU6-1050P-201ENST00000410388 107 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 GPM6BP3-201ENST00000442797 145 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 SNORD5.1-201ENST00000458800 75 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 AC005741.1-201ENST00000511094 432 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 AC007375.1-201ENST00000554513 578 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 MIR5571-201ENST00000577998 113 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 MIR4435-1-201ENST00000582552 80 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 MIR4672-201ENST00000583126 81 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 AC011494.1-201ENST00000596454 237 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 AC018889.1-201ENST00000605372 397 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 AC018462.2-201ENST00000605375 395 ntBASIC2.13□□□□□ -2.07
NKX3-1Q99801 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
NKX3-1Q99801 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.13□□□□□ -2.07
NKX3-1Q99801 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NKX3-1Q99801 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 Y_RNA.263-201ENST00000364659 114 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 Y_RNA.404-201ENST00000383978 102 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 SNORA29-201ENST00000384183 140 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 Y_RNA.594-201ENST00000410373 140 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC078809.1-201ENST00000427601 140 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC079354.2-201ENST00000453523 154 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 RPL7P42-201ENST00000481005 679 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC104564.1-201ENST00000493028 407 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 RNA5SP320-201ENST00000516263 124 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 RNU6-1016P-201ENST00000516689 94 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 RAB11AP2-201ENST00000545905 639 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC093027.1-201ENST00000546698 429 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 IMMP1LP2-201ENST00000552954 492 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.12□□□□□ -2.07
NKX3-1Q99801 MIR3162-201ENST00000581818 82 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AL158827.2-201ENST00000602494 330 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AL138963.2-201ENST00000605137 226 ntBASIC2.12□□□□□ -2.07
NKX3-1Q99801 AC009229.3-201ENST00000608056 282 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms