Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SRIP1-201ENST00000489235 288 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 RN7SL604P-201ENST00000492589 296 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 RPL29P14-201ENST00000495837 428 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 AC083906.5-201ENST00000503722 328 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 RNA5SP154-201ENST00000516193 111 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 CBX3P4-201ENST00000538909 354 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 MIR5684-201ENST00000585074 65 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 AC073349.3-201ENST00000617616 186 ntBASIC3.19□□□□□ -1.9
CCDC140Q96MF4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC140Q96MF4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 SNORA60-201ENST00000362396 134 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 RNU6-234P-201ENST00000365229 104 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 RNU6-211P-201ENST00000384047 107 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 SNORD14D-201ENST00000384390 87 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 SNORA37-201ENST00000384504 129 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 RNU6-1248P-201ENST00000391096 64 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 AL031003.1-201ENST00000404229 172 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 COX6CP10-201ENST00000416832 224 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 RNU7-57P-201ENST00000459540 60 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 AC010618.1-201ENST00000469924 477 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 RNU7-143P-201ENST00000516781 65 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 AC022559.1-201ENST00000520905 205 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 CYCSP29-201ENST00000533731 318 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 AC105245.1-201ENST00000581934 244 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 MIR3939-201ENST00000582614 106 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 AC011921.3-201ENST00000605540 361 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 AC069294.1-201ENST00000608397 350 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 MIR6716-201ENST00000613413 80 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 AC080128.1-201ENST00000474389 1917 ntBASIC3.18□□□□□ -1.9
CCDC140Q96MF4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC140Q96MF4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC140Q96MF4 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC140Q96MF4 RNU6-1020P-201ENST00000363684 107 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 SNORD115-30-201ENST00000364117 82 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 SNORA68.1-201ENST00000364537 132 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.308-201ENST00000365043 101 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 RNU6-1062P-201ENST00000383908 107 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 MIR586-201ENST00000385035 97 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 MIR1283-1-201ENST00000408494 87 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 U6atac.2-201ENST00000408644 118 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 BTF3P11-201ENST00000426582 477 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 COX6CP14-201ENST00000469580 174 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 HMGN2P9-201ENST00000476875 229 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 AC023141.11-201ENST00000508864 202 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 MRPL49P2-201ENST00000521066 465 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 AC087441.2-201ENST00000529141 262 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 RN7SL600P-201ENST00000581811 299 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 MIR4753-201ENST00000585119 83 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC140Q96MF4 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC140Q96MF4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC140Q96MF4 AC012603.1-201ENST00000606424 528 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 SNX18P1Y-201ENST00000616231 511 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC140Q96MF4 MIR7157-201ENST00000635801 60 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC140Q96MF4 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC140Q96MF4 MAPK10-253ENST00000641010 4072 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 ZNF962P-201ENST00000443465 3140 ntBASIC3.17□□□□□ -1.9
CCDC140Q96MF4 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CCDC140Q96MF4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 SNORD35B-201ENST00000363660 87 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 RNU6-743P-201ENST00000364151 106 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.243-201ENST00000364481 109 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 Y_RNA.555-201ENST00000384673 110 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AL357075.1-201ENST00000404107 726 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AL603908.1-201ENST00000406098 201 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 MICF-203ENST00000432679 129 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 SNORD2.1-201ENST00000458762 69 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AC010469.1-201ENST00000463864 576 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 ATP5EP1-201ENST00000510257 156 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.16□□□□□ -1.9
CCDC140Q96MF4 IGKV2-38-201ENST00000517443 247 ntBASIC3.16□□□□□ -1.9
CCDC140Q96MF4 AC109329.2-201ENST00000519658 482 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms