Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC004832.5-201ENST00000608677 401 ntBASIC3.36□□□□□ -1.87
CHFRQ96EP1 AC108706.1-201ENST00000611053 297 ntBASIC3.36□□□□□ -1.87
CHFRQ96EP1 AC097372.5-201ENST00000623665 376 ntBASIC3.36□□□□□ -1.87
CHFRQ96EP1 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CHFRQ96EP1 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.35□□□□□ -1.87
CHFRQ96EP1 RBBP8P1-201ENST00000449447 1844 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 RNU6-923P-201ENST00000364753 107 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 Y_RNA.418-201ENST00000384029 102 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 Y_RNA.441-201ENST00000384123 112 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 RNU6-1179P-201ENST00000384667 107 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 RNU5E-9P-201ENST00000411164 104 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 Y_RNA.629-201ENST00000411368 105 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 RPL23AP36-201ENST00000413895 458 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 AL096701.2-201ENST00000416920 238 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 PPP1R11P2-201ENST00000423543 382 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 RPL27AP8-201ENST00000424277 446 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 RPL26P6-201ENST00000440913 438 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 AL031183.1-201ENST00000457667 207 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 RNU7-87P-201ENST00000459343 62 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 AP001324.2-201ENST00000461163 319 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 RN7SL863P-201ENST00000462370 296 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 AC140059.1-201ENST00000489238 361 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 RPL23AP94-201ENST00000512518 302 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 SNORA70.19-201ENST00000516717 90 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 AC091144.1-201ENST00000519573 138 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.35□□□□□ -1.87
CHFRQ96EP1 AC027288.2-201ENST00000553028 243 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 MED28P6-201ENST00000558776 231 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CHFRQ96EP1 MIR4659A-201ENST00000580269 81 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 MIR2682-201ENST00000580305 110 ntBASIC3.35□□□□□ -1.87
CHFRQ96EP1 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CHFRQ96EP1 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.35□□□□□ -1.87
CHFRQ96EP1 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CHFRQ96EP1 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
CHFRQ96EP1 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-37P-201ENST00000362692 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-1155P-201ENST00000363554 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-799P-201ENST00000363567 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-11P-201ENST00000364234 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-7-201ENST00000364784 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-215P-201ENST00000365169 102 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-8-201ENST00000365467 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-326P-201ENST00000365480 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-25P-201ENST00000383873 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-1-201ENST00000383898 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-36P-201ENST00000384172 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-4P-201ENST00000384205 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-5P-201ENST00000384238 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 SNORD63-201ENST00000384262 68 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-3P-201ENST00000384314 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-16P-201ENST00000384385 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 Y_RNA.497-201ENST00000384447 98 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-15P-201ENST00000384534 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-2-201ENST00000384627 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-29P-201ENST00000384637 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-9-201ENST00000384776 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 AL033519.2-201ENST00000403958 392 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNA5SP229-201ENST00000410809 99 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 COTL1P1-201ENST00000422309 375 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RPS29P12-201ENST00000460178 152 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.34□□□□□ -1.87
CHFRQ96EP1 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.34□□□□□ -1.87
CHFRQ96EP1 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.34□□□□□ -1.87
CHFRQ96EP1 AC104581.2-201ENST00000572227 430 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 MIR4308-201ENST00000580634 81 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 RNU6-6P-201ENST00000606623 107 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.34□□□□□ -1.87
CHFRQ96EP1 AL138880.2-201ENST00000616214 239 ntBASIC3.34□□□□□ -1.87
CHFRQ96EP1 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.34□□□□□ -1.87
CHFRQ96EP1 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.34□□□□□ -1.87
CHFRQ96EP1 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
CHFRQ96EP1 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHFRQ96EP1 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHFRQ96EP1 Y_RNA.275-201ENST00000364726 110 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 RNU6-384P-201ENST00000364900 104 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 RNU6-827P-201ENST00000365553 106 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 RNU6-44P-201ENST00000384045 107 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 SNORA54-201ENST00000384281 123 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 RNU6-1035P-201ENST00000384477 107 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 RNU6-417P-201ENST00000384712 107 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 Y_RNA.568-201ENST00000384742 113 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 SNORD56-201ENST00000413522 71 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.33□□□□□ -1.88
CHFRQ96EP1 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.33□□□□□ -1.88
CHFRQ96EP1 AL358453.1-201ENST00000422522 250 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 MTCO1P39-201ENST00000426148 480 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 AL591043.1-201ENST00000432461 424 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.33□□□□□ -1.88
CHFRQ96EP1 RN7SKP210-201ENST00000459176 261 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 Y_RNA.638-201ENST00000459374 113 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 AC092185.1-201ENST00000491371 97 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 AC097462.2-201ENST00000504623 481 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.33□□□□□ -1.88
CHFRQ96EP1 MIR892C-201ENST00000516410 77 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 RNU2-31P-201ENST00000516954 155 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 CASP1P1-201ENST00000526345 212 ntBASIC3.33□□□□□ -1.88
CHFRQ96EP1 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHFRQ96EP1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.33□□□□□ -1.88
CHFRQ96EP1 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms