Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LINC02555-201ENST00000563933 1951 ntBASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
CLIP3Q96DZ5 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
CLIP3Q96DZ5 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.4□□□□□ -1.86
CLIP3Q96DZ5 SNORD113-1-201ENST00000365321 69 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.581-201ENST00000391017 97 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 SNORA12.2-201ENST00000391040 156 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 U3.26-201ENST00000391236 204 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 AL512633.1-201ENST00000399931 655 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 MIR190B-201ENST00000401119 79 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 MIR1298-201ENST00000408783 112 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 AL513124.1-201ENST00000450410 614 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 U8.22-201ENST00000459141 133 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 U8.21-201ENST00000459536 136 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 AL590705.4-201ENST00000532209 134 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 AC024581.2-201ENST00000619986 252 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 AP003355.3-201ENST00000623465 114 ntBASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.4□□□□□ -1.87
CLIP3Q96DZ5 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.358-201ENST00000365491 99 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.439-201ENST00000384119 94 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 RNY3P4-201ENST00000384428 101 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 RNA5SP390-201ENST00000410191 113 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.644-201ENST00000459006 113 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 AP001324.2-201ENST00000461163 319 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 RN7SL601P-201ENST00000471221 293 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 AP001025.1-201ENST00000486139 332 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.674-201ENST00000516362 113 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 RN7SKP83-201ENST00000516512 178 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 SCARNA11.3-201ENST00000517276 130 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 AC096577.2-201ENST00000611455 153 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 MIR7975-201ENST00000619350 68 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 U4.6-201ENST00000621618 127 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 AC097372.5-201ENST00000623665 376 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 AC090617.7-201ENST00000623952 126 ntBASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
CLIP3Q96DZ5 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.143-201ENST00000363520 106 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 U3.13-201ENST00000364804 214 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.405-201ENST00000383979 100 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 RNU6-1083P-201ENST00000384022 107 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.451-201ENST00000384200 100 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 RNU6-622P-201ENST00000384272 103 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.506-201ENST00000384494 102 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.524-201ENST00000384564 100 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.561-201ENST00000384694 100 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 RNU6-493P-201ENST00000391321 108 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 MTCYBP2-201ENST00000407745 171 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 RNA5SP293-201ENST00000410527 113 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC007969.2-201ENST00000441891 191 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 RNU7-120P-201ENST00000459334 63 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 RPL27AP5-201ENST00000469428 449 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 RN7SL442P-201ENST00000473804 320 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC025518.1-201ENST00000479856 347 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC097462.2-201ENST00000504623 481 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 SCARNA17.1-201ENST00000516211 143 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 SCARNA17.2-201ENST00000516334 143 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.683-201ENST00000516508 93 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 Y_RNA.703-201ENST00000516846 111 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 RNU6-612P-201ENST00000516909 102 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 SNORA31.18-201ENST00000517043 134 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 CKS1BP7-201ENST00000522230 235 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC093023.1-201ENST00000547375 507 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC104581.2-201ENST00000572227 430 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC090897.2-201ENST00000581715 130 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC010620.2-201ENST00000600135 313 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 SCARNA17.4-201ENST00000614296 143 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 AC073073.2-201ENST00000609827 2578 ntBASIC3.38□□□□□ -1.87
CLIP3Q96DZ5 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms