Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 Y_RNA.559-201ENST00000384686 107 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 POLHP1-201ENST00000411806 470 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 VN1R36P-201ENST00000414936 291 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AC244670.1-201ENST00000436879 112 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 MTND3P16-201ENST00000452205 344 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AC145146.1-201ENST00000496370 254 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AK3P2-201ENST00000507976 429 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 PTP4A1P4-201ENST00000512479 322 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 MTND3P5-201ENST00000512798 333 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 Y_RNA.704-201ENST00000516851 102 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AP001893.2-201ENST00000526949 202 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 MIR5692C1-201ENST00000585309 91 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 BNIP3P25-201ENST00000596023 559 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AC104458.1-201ENST00000608243 463 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 AC022513.1-201ENST00000624512 117 ntBASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
CCDC54Q8NEL0 MIR449A-201ENST00000362113 91 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 SNORD114-6-201ENST00000364393 72 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 Y_RNA.372-201ENST00000365599 102 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 SNORA8-201ENST00000384574 139 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 MIR597-201ENST00000384968 97 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 MIR29B2-201ENST00000385055 81 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 SNORA12.2-201ENST00000391040 156 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 MIR1294-201ENST00000408503 142 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 RNU6-908P-201ENST00000410160 94 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 RN7SKP61-201ENST00000410642 295 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AL133396.1-201ENST00000432048 687 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 HMGN2P3-201ENST00000433603 273 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 HMGN2P5-201ENST00000436882 273 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AC093259.1-201ENST00000509755 300 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 ATP5EP1-201ENST00000510257 156 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 RNU6-189P-201ENST00000516120 101 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 RNU6-991P-201ENST00000516168 107 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 RNU6-970P-201ENST00000516312 107 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 Y_RNA.693-201ENST00000516641 110 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AC027807.1-201ENST00000559921 996 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 MIR4285-201ENST00000581001 85 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AC092747.3-201ENST00000603769 301 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AF250324.2-201ENST00000608299 610 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 AC092807.2-201ENST00000609367 243 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.53□□□□□ -2.16
CCDC54Q8NEL0 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 RNU6-1322P-201ENST00000364309 107 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 RNU6-483P-201ENST00000384088 108 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 RNU6-378P-201ENST00000384324 107 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 SNORA40.19-201ENST00000390846 128 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 MTCYBP2-201ENST00000407745 171 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 AL590135.1-201ENST00000422215 156 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 AC019205.3-201ENST00000424573 156 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 AC016700.2-201ENST00000446011 156 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 MTCO2P7-201ENST00000446518 666 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 RNU7-138P-201ENST00000459479 64 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 AC007547.1-201ENST00000462177 490 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 AC015911.1-201ENST00000495111 156 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 RNU6-323P-201ENST00000521915 107 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 HSPE1P4-201ENST00000550617 308 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 AC024909.2-201ENST00000553035 286 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 TRAV32-201ENST00000553993 340 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 AC087241.4-201ENST00000612441 480 ntBASIC1.52□□□□□ -2.17
CCDC54Q8NEL0 SNORD48-201ENST00000364953 64 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 RNU4-66P-201ENST00000365199 138 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 RNU6-142P-201ENST00000384019 107 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.436-201ENST00000384097 102 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 SNORD14D-201ENST00000384390 87 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 TIMM9P3-201ENST00000428659 274 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 MTCO2P3-201ENST00000442543 421 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 RNU6-1208P-201ENST00000459588 107 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 SRRM1P2-201ENST00000464531 1192 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 AC022447.4-201ENST00000504053 364 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 AC096745.1-201ENST00000509945 370 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 AC092436.3-201ENST00000511788 257 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 AC104576.1-201ENST00000524225 88 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 DEFB131C-201ENST00000528817 165 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 GNAI2P1-201ENST00000541815 315 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 AC025423.5-201ENST00000550230 219 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 SNRPGP19-201ENST00000603826 189 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 AL670379.2-201ENST00000604983 252 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 CTHRC1P1-201ENST00000605383 469 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms