Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-937P-201ENST00000384325 106 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 MIR1298-201ENST00000408783 112 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 AL353705.4-201ENST00000449661 238 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 HMGN1P18-201ENST00000457642 277 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 RPS4XP13-201ENST00000483219 789 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 AC011602.1-201ENST00000546484 331 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 AC110741.2-201ENST00000605278 268 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 RMST_6.1-201ENST00000611980 203 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 SCARNA4-201ENST00000629045 128 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 AC241585.2-209ENST00000638217 143 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 AL033519.2-201ENST00000403958 392 ntBASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 EIF1AXP1-201ENST00000419267 435 ntBASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 RPS12P18-201ENST00000442381 270 ntBASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-496P-201ENST00000516145 99 ntBASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-1183P-201ENST00000517054 60 ntBASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 U2.22-201ENST00000636441 106 ntBASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
USHBP1Q8N6Y0 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 Y_RNA.83-201ENST00000363005 113 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 SNORD115-32-201ENST00000364079 82 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-1286P-201ENST00000383871 107 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 AL139281.1-201ENST00000422120 335 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 MTATP6P7-201ENST00000453315 681 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 SERF1AP1-201ENST00000514575 187 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-1282P-201ENST00000516735 96 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 AP004607.1-201ENST00000524456 203 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 MIR4643-201ENST00000577473 78 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 MIR3162-201ENST00000581818 82 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 MIR3124-201ENST00000582636 67 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 RPL23AP88-201ENST00000605759 454 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 AC011476.5-201ENST00000615594 130 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 AC097372.5-201ENST00000623665 376 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 AL136360.1-201ENST00000503377 1900 ntBASIC3.93□□□□□ -1.78
USHBP1Q8N6Y0 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 FTLP6-201ENST00000355274 422 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 AC062016.1-201ENST00000355719 319 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 RNU4-90P-201ENST00000362773 141 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-843P-201ENST00000384454 104 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 MIR32-201ENST00000384965 70 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 MIR325-201ENST00000385260 98 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 HSPE1P26-201ENST00000405341 275 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 Y_RNA.793-201ENST00000411222 111 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 Y_RNA.644-201ENST00000459006 113 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 Y_RNA.674-201ENST00000516362 113 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 FTX_3.1-201ENST00000610451 147 ntBASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.92□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-222P-201ENST00000362438 107 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 Y_RNA.199-201ENST00000364014 102 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-879P-201ENST00000364328 108 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 Z98749.2-208ENST00000381646 500 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 MIR153-2-201ENST00000385225 87 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-1197P-201ENST00000391183 107 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 RNU2-37P-201ENST00000410695 177 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-1245P-201ENST00000411130 106 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 EIF1P2-201ENST00000428233 350 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 AC243964.1-201ENST00000441814 261 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 RPL30P1-201ENST00000488676 339 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 AC083906.5-201ENST00000503722 328 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 MIR4425-201ENST00000580572 84 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 ELOCP29-201ENST00000588193 334 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 U2.14-201ENST00000615943 113 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 U7.8-201ENST00000619968 63 ntBASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.91□□□□□ -1.78
USHBP1Q8N6Y0 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
USHBP1Q8N6Y0 AL157777.2-201ENST00000258070 137 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-290P-201ENST00000365212 101 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms