| ATG9A | Q7Z3C6 | ZNF720P1-201 | ENST00000562403 | 1939 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC002543.1-201 | ENST00000299783 | 1954 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | DPY19L2P1-203 | ENST00000458672 | 3347 nt | TSL 1 (best) BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC003984.1-201 | ENST00000450977 | 4104 nt | TSL 1 (best) BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RNU6-867P-201 | ENST00000364956 | 107 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | SNORD81.2-201 | ENST00000365153 | 76 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC138623.1-201 | ENST00000418060 | 216 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | DAP3P1-201 | ENST00000441522 | 278 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | MTND1P17-201 | ENST00000448961 | 204 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | SPIN4-AS1-201 | ENST00000451979 | 426 nt | TSL 2 BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | HMGB3P3-201 | ENST00000510526 | 400 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RNA5SP112-201 | ENST00000515937 | 99 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RNU6-875P-201 | ENST00000516488 | 106 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.691-201 | ENST00000516611 | 103 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC109329.1-201 | ENST00000518744 | 317 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC023824.2-201 | ENST00000566185 | 400 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | LINC01195-201 | ENST00000570118 | 451 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | MIR4658-201 | ENST00000584344 | 65 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC018889.1-201 | ENST00000605372 | 397 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AL121917.1-203 | ENST00000605534 | 577 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC009318.2-201 | ENST00000610917 | 651 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AL359854.1-201 | ENST00000614203 | 1594 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC104260.1-201 | ENST00000616660 | 539 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | NEB-203 | ENST00000397345 | 26202 nt | APPRIS ALT2 TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | NEB-209 | ENST00000427231 | 26202 nt | APPRIS ALT2 TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | FGF7-206 | ENST00000614567 | 3936 nt | APPRIS P1 TSL 1 (best) BASIC | 2.55 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | PYGO1-201 | ENST00000302000 | 8488 nt | TSL 1 (best) BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | N4BP2L2-205 | ENST00000446957 | 2071 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RBBP8P1-201 | ENST00000449447 | 1844 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | NAALADL2-203 | ENST00000454872 | 9865 nt | APPRIS P1 TSL 1 (best) BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | MTND4P23-201 | ENST00000447723 | 1363 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | SNORD56.1-201 | ENST00000362913 | 68 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | SNORD114-19-201 | ENST00000363072 | 75 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.263-201 | ENST00000364659 | 114 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RNU6-336P-201 | ENST00000364891 | 107 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RNU5E-4P-201 | ENST00000364931 | 120 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AL030996.1-201 | ENST00000411430 | 235 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | SNRPG-202 | ENST00000413456 | 398 nt | TSL 3 BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | PDCL2P1-201 | ENST00000419302 | 352 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AL136369.1-201 | ENST00000437825 | 244 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | SNRPG-205 | ENST00000449935 | 428 nt | TSL 1 (best) BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | PCMTD1P1-201 | ENST00000455560 | 355 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | MTND1P11-201 | ENST00000456661 | 876 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AMD1P1-201 | ENST00000457220 | 922 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RPL9P9-202 | ENST00000466501 | 579 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC091951.2-201 | ENST00000500762 | 203 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC103851.1-201 | ENST00000506833 | 274 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC107222.1-201 | ENST00000510899 | 637 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.682-201 | ENST00000516457 | 100 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | SNORA31.23-201 | ENST00000517219 | 133 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | ZNF436-AS1-205 | ENST00000518600 | 376 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AP005639.2-201 | ENST00000527592 | 928 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC103996.1-201 | ENST00000555468 | 102 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC091135.1-201 | ENST00000585943 | 307 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC064836.2-201 | ENST00000609491 | 462 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | MIR6895-201 | ENST00000613497 | 78 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.783-201 | ENST00000613546 | 102 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | MIR7157-201 | ENST00000635801 | 60 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AL109809.4-201 | ENST00000603520 | 2185 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | CLLU1-201 | ENST00000378485 | 3897 nt | APPRIS P1 TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | NEDD4-205 | ENST00000506154 | 6751 nt | TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RGS18-201 | ENST00000367460 | 2150 nt | APPRIS P1 TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | ZNF451-208 | ENST00000491832 | 3632 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AGR3-201 | ENST00000310398 | 749 nt | APPRIS P1 TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RNU6-486P-201 | ENST00000363116 | 107 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AL356432.1-201 | ENST00000405809 | 419 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RPL37P10-201 | ENST00000412884 | 288 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AL591806.2-201 | ENST00000433122 | 173 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | CR769767.1-201 | ENST00000436337 | 346 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | Y_RNA.635-201 | ENST00000459041 | 101 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AP001324.2-201 | ENST00000461163 | 319 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC090096.1-201 | ENST00000489168 | 390 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC018437.1-201 | ENST00000492214 | 406 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | LNX1-AS1-203 | ENST00000511989 | 488 nt | TSL 2 BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | LIAS-206 | ENST00000513731 | 826 nt | TSL 5 BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC023866.1-201 | ENST00000518064 | 579 nt | TSL 4 BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC027018.1-202 | ENST00000534723 | 383 nt | TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC121758.2-201 | ENST00000553271 | 193 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | TRAV32-201 | ENST00000553993 | 340 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC009120.5-201 | ENST00000561669 | 475 nt | TSL 5 BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | hsa-mir-3119-1.1-201 | ENST00000577602 | 85 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AP001496.1-201 | ENST00000579113 | 471 nt | TSL 4 BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | AC090897.2-201 | ENST00000581715 | 130 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | MIR4765-201 | ENST00000585007 | 77 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | RPS15AP11-201 | ENST00000594193 | 385 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | Clostridiales-1.2-201 | ENST00000636724 | 160 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | SAGE1-201 | ENST00000324447 | 2952 nt | APPRIS P2 TSL 5 BASIC | 2.53 | □□□□□ -2 | | |
| ATG9A | Q7Z3C6 | ZNF355P-201 | ENST00000427301 | 3216 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | RNU6-1010P-201 | ENST00000362757 | 107 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | RNU6-428P-201 | ENST00000362942 | 107 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | RNU6-790P-201 | ENST00000384479 | 105 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | RNU6-1222P-201 | ENST00000384615 | 107 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | RNU6-95P-201 | ENST00000384697 | 107 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | BTF3L4P2-201 | ENST00000392798 | 346 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | MIR548K-201 | ENST00000408406 | 116 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | FABP5P14-201 | ENST00000437273 | 393 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | AC004383.1-201 | ENST00000438135 | 289 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | snoU13.23-201 | ENST00000458863 | 104 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | Y_RNA.638-201 | ENST00000459374 | 113 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ATG9A | Q7Z3C6 | RPL36AP48-201 | ENST00000485521 | 314 nt | BASIC | 2.52 | □□□□□ -2.01 | | |