Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU6-197P-201ENST00000516680 100 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 RNA5SP437-201ENST00000517249 129 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 DEFB130C-202ENST00000530001 230 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 AL138889.2-201ENST00000603883 242 ntBASIC0.37□□□□□ -2.35
USP54Q70EL1 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
USP54Q70EL1 MTND4P16-201ENST00000466108 1367 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC0.36□□□□□ -2.35
USP54Q70EL1 AL391994.1-201ENST00000254724 282 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 RNU6-560P-201ENST00000364007 108 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 MIR329-2-201ENST00000385029 84 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 FCF1P10-201ENST00000407590 479 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 ELOCP9-201ENST00000418624 239 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC0.36□□□□□ -2.35
USP54Q70EL1 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.36□□□□□ -2.35
USP54Q70EL1 MTCO3P18-201ENST00000440206 761 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 MTCO3P7-201ENST00000510008 774 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC0.36□□□□□ -2.35
USP54Q70EL1 AL121579.1-201ENST00000555129 305 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 AL590229.1-201ENST00000603497 542 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 Z83818.1-201ENST00000603584 150 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 AC107304.1-201ENST00000604229 296 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 AC099654.8-201ENST00000637757 681 ntBASIC0.36□□□□□ -2.35
USP54Q70EL1 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC0.35□□□□□ -2.35
USP54Q70EL1 AL356776.1-201ENST00000406574 447 ntBASIC0.35□□□□□ -2.35
USP54Q70EL1 RNU2-62P-201ENST00000410868 191 ntBASIC0.35□□□□□ -2.35
USP54Q70EL1 AC063976.4-201ENST00000421971 163 ntBASIC0.35□□□□□ -2.35
USP54Q70EL1 COX6CP6-201ENST00000490840 228 ntBASIC0.35□□□□□ -2.35
USP54Q70EL1 PDCD5P2-201ENST00000507570 312 ntBASIC0.35□□□□□ -2.35
USP54Q70EL1 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.35□□□□□ -2.35
USP54Q70EL1 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.35□□□□□ -2.35
USP54Q70EL1 AC146944.4-201ENST00000602697 718 ntBASIC0.35□□□□□ -2.35
USP54Q70EL1 AC068620.3-201ENST00000602749 560 ntBASIC0.35□□□□□ -2.35
USP54Q70EL1 AL022154.1-201ENST00000604698 785 ntBASIC0.35□□□□□ -2.35
USP54Q70EL1 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.35□□□□□ -2.35
USP54Q70EL1 AC134026.1-201ENST00000623249 2239 ntBASIC0.35□□□□□ -2.35
USP54Q70EL1 RNU6-142P-201ENST00000384019 107 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 Y_RNA.471-201ENST00000384312 102 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 SNORA12-201ENST00000391162 147 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 RAP1BP3-201ENST00000407180 549 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 AL953862.1-201ENST00000423016 168 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 ZNF736P7Y-201ENST00000425158 820 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 AC002429.1-201ENST00000437672 148 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 SNRPEP8-201ENST00000442866 260 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 AC006026.2-201ENST00000457376 180 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 AC048334.1-201ENST00000477975 159 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.34□□□□□ -2.35
USP54Q70EL1 RNU4-77P-201ENST00000516692 156 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 RNU6-165P-201ENST00000517170 99 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 AC025423.5-201ENST00000550230 219 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.34□□□□□ -2.35
USP54Q70EL1 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.34□□□□□ -2.35
USP54Q70EL1 MIR4636-201ENST00000582271 80 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 BNIP3P26-201ENST00000600827 554 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 AC105129.3-201ENST00000605455 485 ntBASIC0.34□□□□□ -2.35
USP54Q70EL1 SNORD56.1-201ENST00000362913 68 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RNU6-1285P-201ENST00000363480 105 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.33□□□□□ -2.36
USP54Q70EL1 MTCO2P25-201ENST00000447065 681 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.33□□□□□ -2.36
USP54Q70EL1 GAPDHP17-201ENST00000449858 1001 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC0.33□□□□□ -2.36
USP54Q70EL1 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC0.33□□□□□ -2.36
USP54Q70EL1 RNA5SP255-201ENST00000516370 107 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 SNORA43.2-201ENST00000516652 128 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RNU6-914P-201ENST00000516749 109 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 AC091163.3-201ENST00000518269 1144 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.33□□□□□ -2.36
USP54Q70EL1 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.33□□□□□ -2.36
USP54Q70EL1 AC124016.2-201ENST00000610058 665 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
USP54Q70EL1 AC024940.5-201ENST00000622889 474 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RNA5SP361-201ENST00000362686 118 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 Y_RNA.311-201ENST00000365068 96 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RNU4-12P-201ENST00000365233 139 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RNA5SP259-201ENST00000365541 109 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RNU5E-6P-201ENST00000365574 115 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
USP54Q70EL1 Y_RNA.476-201ENST00000384347 108 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 MIR548B-201ENST00000385247 97 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
USP54Q70EL1 MIR942-201ENST00000401111 86 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RNA5SP111-201ENST00000411386 101 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.33□□□□□ -2.36
USP54Q70EL1 RAB28P5-201ENST00000427490 651 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 AC004854.1-201ENST00000440356 349 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
USP54Q70EL1 AC022447.4-201ENST00000504053 364 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 SNORD79.1-201ENST00000516069 84 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 AC115990.1-201ENST00000526957 301 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 AC087897.1-201ENST00000550134 156 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.33□□□□□ -2.36
USP54Q70EL1 VN1R82P-201ENST00000601481 356 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 MTATP6P2-201ENST00000603319 678 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 AL451064.1-201ENST00000607718 471 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 SCARNA4-202ENST00000625402 129 ntBASIC0.33□□□□□ -2.36
USP54Q70EL1 RNU6-527P-201ENST00000363425 104 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 RPS26P5-201ENST00000418544 335 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms