Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RNU5F-3P-201ENST00000363767 117 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 RNU6-873P-201ENST00000363833 107 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 Y_RNA.462-201ENST00000384268 102 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 MIR128-1-201ENST00000384921 82 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 RNU2-20P-201ENST00000410425 191 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 DBIP2-201ENST00000419076 262 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 AC112220.1-201ENST00000434628 355 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.49□□□□□ -1.85
USP53Q70EK8 SETP5-201ENST00000437270 562 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 MTND4LP30-201ENST00000454092 297 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 AC025518.1-201ENST00000479856 347 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 AC026784.1-201ENST00000507986 352 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.49□□□□□ -1.85
USP53Q70EK8 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.49□□□□□ -1.85
USP53Q70EK8 AL356575.1-201ENST00000603008 283 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 AL034555.1-201ENST00000604816 211 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.49□□□□□ -1.85
USP53Q70EK8 MIR7851-201ENST00000610611 160 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 uc_338.14-201ENST00000613162 166 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.49□□□□□ -1.85
USP53Q70EK8 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP53Q70EK8 AC007256.1-201ENST00000392253 2765 ntBASIC3.49□□□□□ -1.85
USP53Q70EK8 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.49□□□□□ -1.85
USP53Q70EK8 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.49□□□□□ -1.85
USP53Q70EK8 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP53Q70EK8 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.48□□□□□ -1.85
USP53Q70EK8 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.48□□□□□ -1.85
USP53Q70EK8 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP53Q70EK8 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP53Q70EK8 AL391987.6-201ENST00000305671 199 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 RNU1-18P-201ENST00000363062 164 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 RNU1-105P-201ENST00000363470 161 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 SNORD113-8-201ENST00000363497 74 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 Y_RNA.237-201ENST00000364439 102 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
USP53Q70EK8 Y_RNA.477-201ENST00000384352 108 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 MIR767-201ENST00000390228 109 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
USP53Q70EK8 U3.26-201ENST00000391236 204 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 MIR548H3-201ENST00000408771 118 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 RNA5SP120-201ENST00000410900 112 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.48□□□□□ -1.85
USP53Q70EK8 CYCSP4-201ENST00000429682 331 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 AC005002.2-201ENST00000438228 269 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.48□□□□□ -1.85
USP53Q70EK8 AC006445.1-201ENST00000491925 405 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 RN7SKP83-201ENST00000516512 178 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 RNU6-711P-201ENST00000517255 106 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.48□□□□□ -1.85
USP53Q70EK8 AP006245.1-201ENST00000522549 120 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 MIR3923-201ENST00000579521 83 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP53Q70EK8 AC141273.2-201ENST00000618989 130 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 AC244205.2-202ENST00000635781 342 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC3.48□□□□□ -1.85
USP53Q70EK8 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP53Q70EK8 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.48□□□□□ -1.85
USP53Q70EK8 BX322639.1-202ENST00000423987 2213 ntBASIC3.48□□□□□ -1.85
USP53Q70EK8 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
USP53Q70EK8 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP53Q70EK8 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
USP53Q70EK8 AL079305.1-201ENST00000623159 3008 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP53Q70EK8 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP53Q70EK8 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
USP53Q70EK8 RNU6-799P-201ENST00000363567 107 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 SNORA20.1-201ENST00000364790 130 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 Y_RNA.541-201ENST00000384640 113 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 MIR208B-201ENST00000401172 77 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.47□□□□□ -1.85
USP53Q70EK8 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.47□□□□□ -1.85
USP53Q70EK8 RNU6-496P-201ENST00000516145 99 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 RNU6-1338P-201ENST00000516328 91 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.47□□□□□ -1.85
USP53Q70EK8 MIR4423-201ENST00000580922 80 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 MIR4513-201ENST00000581077 86 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 AL442067.1-201ENST00000613261 223 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.47□□□□□ -1.85
USP53Q70EK8 U4.6-201ENST00000621618 127 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 MAPK10-322ENST00000641485 4530 ntBASIC3.47□□□□□ -1.85
USP53Q70EK8 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
USP53Q70EK8 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USP53Q70EK8 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
USP53Q70EK8 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
USP53Q70EK8 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
USP53Q70EK8 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
USP53Q70EK8 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
USP53Q70EK8 Y_RNA.20-201ENST00000362479 113 ntBASIC3.46□□□□□ -1.86
USP53Q70EK8 Y_RNA.416-201ENST00000384014 113 ntBASIC3.46□□□□□ -1.86
USP53Q70EK8 RNU6-245P-201ENST00000384020 107 ntBASIC3.46□□□□□ -1.86
USP53Q70EK8 RNU6-102P-201ENST00000384485 104 ntBASIC3.46□□□□□ -1.86
USP53Q70EK8 MIR186-201ENST00000384988 86 ntBASIC3.46□□□□□ -1.86
USP53Q70EK8 CBX3P9-201ENST00000402326 552 ntBASIC3.46□□□□□ -1.86
USP53Q70EK8 RNA5SP201-201ENST00000410316 124 ntBASIC3.46□□□□□ -1.86
USP53Q70EK8 Y_RNA.602-201ENST00000410535 92 ntBASIC3.46□□□□□ -1.86
USP53Q70EK8 RN7SKP58-201ENST00000411010 305 ntBASIC3.46□□□□□ -1.86
USP53Q70EK8 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.46□□□□□ -1.86
USP53Q70EK8 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.46□□□□□ -1.86
USP53Q70EK8 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 183.2 ms