Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 ELOCP9-201ENST00000418624 239 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC-0.06□□□□□ -2.42
USF3Q68DE3 MTND4P24-201ENST00000424002 397 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC244098.3-201ENST00000424803 96 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 RPL37P6-201ENST00000460682 294 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 MED28P2-201ENST00000475771 317 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC093534.1-201ENST00000504977 132 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 MTCO3P28-201ENST00000513351 515 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC022868.1-201ENST00000517767 391 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 SUMO2P18-201ENST00000518873 252 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC141557.1-201ENST00000540982 400 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC016256.1-201ENST00000547971 354 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC-0.06□□□□□ -2.42
USF3Q68DE3 AL157871.3-201ENST00000557231 293 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC025627.3-201ENST00000582078 182 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC116165.2-201ENST00000616705 206 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AL390237.1-201ENST00000404226 1415 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 MIR411-201ENST00000362239 96 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 U3.9-201ENST00000363823 204 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 SUGT1P1-201ENST00000379514 476 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 RNU6-163P-201ENST00000384396 106 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 SNORA75.2-201ENST00000391138 150 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 SNORA75.3-201ENST00000391231 150 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 USP9YP14-201ENST00000430663 563 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC113410.1-201ENST00000505029 247 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 MIR4666A-201ENST00000580160 79 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AP002906.1-201ENST00000603405 233 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC073349.3-201ENST00000617616 186 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 MIRLET7D-201ENST00000362263 87 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 RNU6-216P-201ENST00000363282 104 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 Y_RNA.124-201ENST00000363339 93 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 RNU6-654P-201ENST00000364373 107 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 SNORA27.3-201ENST00000364937 134 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC011233.1-201ENST00000422812 283 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 DPRXP1-201ENST00000426312 460 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 FABP5P4-201ENST00000437203 171 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 AL606662.1-201ENST00000445763 553 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 snoU13.8-201ENST00000458890 104 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 RNU7-21P-201ENST00000459430 62 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC027338.1-201ENST00000514840 825 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC-0.07□□□□□ -2.42
USF3Q68DE3 AL132657.2-201ENST00000564417 358 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC104408.1-201ENST00000605241 170 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 AC097065.2-201ENST00000608159 533 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 MIR371B-201ENST00000638082 66 ntBASIC-0.07□□□□□ -2.42
USF3Q68DE3 RNU6-28P-201ENST00000362378 107 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 RNU6-514P-201ENST00000384208 107 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 CALM2P3-201ENST00000400429 449 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 MTCO2P5-201ENST00000422621 426 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 MTCYBP5-201ENST00000423752 1135 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 MTCO2P12-201ENST00000427426 682 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 LARP1BP3-201ENST00000437229 869 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC-0.08□□□□□ -2.42
USF3Q68DE3 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC-0.08□□□□□ -2.42
USF3Q68DE3 U7.7-201ENST00000459276 60 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 RNU7-34P-201ENST00000459394 64 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 AC112206.3-201ENST00000514578 389 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC-0.08□□□□□ -2.42
USF3Q68DE3 AC008147.4-201ENST00000617570 1204 ntBASIC-0.08□□□□□ -2.42
USF3Q68DE3 RNU6-743P-201ENST00000364151 106 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 SNORA4.2-201ENST00000365313 147 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 RNY1P8-201ENST00000383970 114 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 SNORD116-13-201ENST00000384408 92 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 SNORA80D-201ENST00000384488 135 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC-0.09□□□□□ -2.42
USF3Q68DE3 AC002486.1-201ENST00000435098 391 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 ELOCP30-201ENST00000447108 299 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC-0.09□□□□□ -2.42
USF3Q68DE3 AC104982.1-201ENST00000478775 574 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC-0.09□□□□□ -2.42
USF3Q68DE3 AC109445.1-201ENST00000512356 383 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 AC090888.2-201ENST00000559765 1144 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 MIR5695-201ENST00000579717 85 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 AC091805.2-201ENST00000603848 235 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 AL031281.1-201ENST00000604049 488 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 RMST_10.1-201ENST00000616309 154 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 RNU6-833P-201ENST00000363486 107 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 RNU6-487P-201ENST00000365430 104 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 RNU4-48P-201ENST00000365559 182 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 RNU6-1207P-201ENST00000384343 107 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 AL359634.1-202ENST00000404721 284 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 FCF1P10-201ENST00000407590 479 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC-0.09□□□□□ -2.42
USF3Q68DE3 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC-0.09□□□□□ -2.42
USF3Q68DE3 AC016831.2-201ENST00000417179 352 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 TXNL1P1-201ENST00000429528 554 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 MTCO2P18-201ENST00000457151 658 ntBASIC-0.09□□□□□ -2.42
USF3Q68DE3 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC-0.09□□□□□ -2.42
USF3Q68DE3 RNU6-1315P-201ENST00000517187 99 ntBASIC-0.09□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms