Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
COL7A1Q02388 MIR6134-201ENST00000617606 109 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC009509.4-201ENST00000619202 509 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.06□□□□□ -2.4
COL7A1Q02388 MIR1248-201ENST00000629190 106 ntBASIC0.06□□□□□ -2.4
COL7A1Q02388 AC107982.1-201ENST00000507171 1300 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AP000568.1-201ENST00000282964 442 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC092268.1-201ENST00000342691 405 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MIR103A2-201ENST00000362154 78 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MIR18A-201ENST00000362310 71 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-1066P-201ENST00000363573 105 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 SNORD114-9-201ENST00000364370 72 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 U8.5-201ENST00000364528 136 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-744P-201ENST00000365557 107 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-438P-201ENST00000365561 103 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-1316P-201ENST00000384242 108 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-929P-201ENST00000384429 107 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-1065P-201ENST00000384513 106 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-1274P-201ENST00000384557 107 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MIR578-201ENST00000384828 96 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MIR518A1-201ENST00000385068 85 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 UBE2V1P11-201ENST00000411559 285 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 USP9YP19-201ENST00000412165 485 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 RPS3AP1-201ENST00000413190 320 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MTCO1P21-201ENST00000416634 589 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 COX6CP10-201ENST00000416832 224 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 USP9YP13-201ENST00000417797 480 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 PTGES3P4-201ENST00000426243 356 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC073261.1-201ENST00000429409 121 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RAB11AP1-201ENST00000442978 646 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AC132479.1-201ENST00000449160 144 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AC002350.1-201ENST00000490759 375 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC023194.1-201ENST00000493084 308 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC108740.1-201ENST00000498629 225 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC026414.1-201ENST00000504046 698 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 PDCD5P2-201ENST00000507570 312 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 MTND5P13-201ENST00000513046 1079 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-922P-201ENST00000516753 99 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-714P-201ENST00000516963 103 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNA5SP503-201ENST00000517047 117 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 SNORA31.19-201ENST00000517079 126 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AC022616.8-201ENST00000533569 253 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.05□□□□□ -2.4
COL7A1Q02388 TMF1P1-201ENST00000576058 373 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MIR4789-201ENST00000577469 82 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MIR3912-201ENST00000577566 105 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MIR3664-201ENST00000579074 99 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RAC1P9-201ENST00000604990 392 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AC091304.9-201ENST00000612091 226 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC107905.1-201ENST00000616204 426 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL158163.2-201ENST00000619110 700 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC024581.2-201ENST00000619986 252 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AC006927.4-201ENST00000639187 543 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL079343.1-201ENST00000572358 1771 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 SEC63P2-201ENST00000503863 1939 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MIR411-201ENST00000362239 96 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-862P-201ENST00000362804 105 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-1339P-201ENST00000363574 91 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-289P-201ENST00000364093 107 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-1280P-201ENST00000365211 107 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 SNORA4.2-201ENST00000365313 147 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU4-48P-201ENST00000365559 182 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 SNORA36.2-201ENST00000384004 127 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 Y_RNA.472-201ENST00000384322 102 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-360P-201ENST00000390944 104 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL357139.1-201ENST00000407792 426 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 MTND4P24-201ENST00000424002 397 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RAB28P5-201ENST00000427490 651 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC092423.1-201ENST00000430165 186 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC009237.7-201ENST00000447357 229 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 RPL7P55-201ENST00000450522 746 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC092001.1-201ENST00000453012 261 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MRPL42P4-201ENST00000453267 443 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 FCF1P6-201ENST00000456841 595 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC016925.1-201ENST00000458303 298 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RPL26P26-201ENST00000480251 434 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 BET1P1-201ENST00000482276 359 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC093534.1-201ENST00000504977 132 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC116347.2-201ENST00000514912 523 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-760P-201ENST00000516078 97 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 SNORD27.1-201ENST00000516319 72 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 SNORD60.2-201ENST00000516883 86 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 RNU6-158P-201ENST00000517104 100 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 MTCO2P15-201ENST00000532655 656 ntBASIC0.05□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms