Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL356157.2-201ENST00000605122 111 ntBASIC2.53□□□□□ -2
HOXD3P31249 uc_338.1-201ENST00000612113 180 ntBASIC2.53□□□□□ -2
HOXD3P31249 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.53□□□□□ -2
HOXD3P31249 AL138825.1-201ENST00000618587 192 ntBASIC2.53□□□□□ -2
HOXD3P31249 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.53□□□□□ -2.01
HOXD3P31249 AC009487.2-201ENST00000420969 6821 ntBASIC2.53□□□□□ -2.01
HOXD3P31249 Z75746.1-201ENST00000440243 2080 ntBASIC2.53□□□□□ -2.01
HOXD3P31249 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.53□□□□□ -2.01
HOXD3P31249 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXD3P31249 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
HOXD3P31249 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXD3P31249 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXD3P31249 MIR422A-201ENST00000362286 90 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 Y_RNA.64-201ENST00000362845 102 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 RNU6-487P-201ENST00000365430 104 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 RNU6-142P-201ENST00000384019 107 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 U8.10-201ENST00000384260 133 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 Y_RNA.471-201ENST00000384312 102 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 Y_RNA.551-201ENST00000384661 102 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 RN7SKP61-201ENST00000410642 295 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC138623.1-201ENST00000418060 216 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 WARS2P1-201ENST00000429678 537 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD3P31249 AC025750.2-201ENST00000442609 450 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXD3P31249 AP001324.2-201ENST00000461163 319 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AP000870.1-201ENST00000472927 406 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC090525.1-201ENST00000479116 478 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC006445.1-201ENST00000491925 405 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 GZMAP1-201ENST00000503054 631 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC016632.1-201ENST00000503994 196 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD3P31249 RAC1P5-201ENST00000512182 576 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 RNU6-911P-201ENST00000516523 104 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXD3P31249 NDUFB9P3-201ENST00000521269 501 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AP002404.1-201ENST00000532005 451 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC022080.3-201ENST00000544433 482 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXD3P31249 UBL5P4-201ENST00000562584 236 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC090617.3-201ENST00000573670 475 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 MIR5004-201ENST00000579078 107 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 RPS15AP11-201ENST00000594193 385 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 RPS29P30-201ENST00000600975 111 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD3P31249 AL391813.1-201ENST00000603098 260 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 PRR13P7-201ENST00000605538 430 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 AC002064.3-201ENST00000623448 346 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 HAUS6P2-201ENST00000433254 2404 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXD3P31249 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.52□□□□□ -2.01
HOXD3P31249 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
HOXD3P31249 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
HOXD3P31249 RNU1-70P-201ENST00000362618 164 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 Y_RNA.105-201ENST00000363182 111 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXD3P31249 Y_RNA.452-201ENST00000384202 108 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 Y_RNA.458-201ENST00000384240 102 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 RNU6-748P-201ENST00000384648 107 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 MIR147B-201ENST00000390185 80 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 MTCO3P19-201ENST00000415864 321 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 AL590135.1-201ENST00000422215 156 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 AC019205.3-201ENST00000424573 156 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 AC078809.1-201ENST00000427601 140 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 OSTCP8-201ENST00000445117 448 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 AC016700.2-201ENST00000446011 156 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXD3P31249 AC112771.1-201ENST00000463581 102 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 RPL27AP5-201ENST00000469428 449 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 RNU5F-2P-201ENST00000516066 82 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 RNY3P15-201ENST00000516297 97 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 RNU6-897P-201ENST00000517135 105 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 AC022868.1-201ENST00000517767 391 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 AP002770.2-201ENST00000543613 532 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 AL442163.3-201ENST00000554110 156 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 MIR3671-201ENST00000580455 88 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 MIR4425-201ENST00000580572 84 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXD3P31249 AC107294.3-201ENST00000609211 526 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 RMST_6.1-201ENST00000611980 203 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 U4.1-201ENST00000620349 87 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 AC091903.1-201ENST00000624322 454 ntBASIC2.51□□□□□ -2.01
HOXD3P31249 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
HOXD3P31249 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXD3P31249 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
HOXD3P31249 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD3P31249 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXD3P31249 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.5□□□□□ -2.01
HOXD3P31249 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD3P31249 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD3P31249 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD3P31249 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.5□□□□□ -2.01
HOXD3P31249 MIR30E-201ENST00000362104 92 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 RNU6-212P-201ENST00000362642 104 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 RNU6-1301P-201ENST00000362724 104 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 RNU6-541P-201ENST00000384709 110 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 CST9LP2-201ENST00000437612 320 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 RPEP5-201ENST00000441137 268 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 AC073910.1-201ENST00000445047 438 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms