Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.08□□□□□ -1.76
MSX1P28360 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
MSX1P28360 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.08□□□□□ -1.76
MSX1P28360 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
MSX1P28360 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSX1P28360 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
MSX1P28360 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
MSX1P28360 USP8P1-201ENST00000494673 3183 ntBASIC4.08□□□□□ -1.76
MSX1P28360 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSX1P28360 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX1P28360 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX1P28360 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
MSX1P28360 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX1P28360 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
MSX1P28360 RNA5SP307-201ENST00000362863 116 ntBASIC4.07□□□□□ -1.76
MSX1P28360 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
MSX1P28360 RNU1-63P-201ENST00000383902 164 ntBASIC4.07□□□□□ -1.76
MSX1P28360 MIR1278-201ENST00000408753 81 ntBASIC4.07□□□□□ -1.76
MSX1P28360 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
MSX1P28360 AC105137.1-201ENST00000484355 562 ntBASIC4.07□□□□□ -1.76
MSX1P28360 AC005921.1-201ENST00000510589 286 ntBASIC4.07□□□□□ -1.76
MSX1P28360 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.07□□□□□ -1.76
MSX1P28360 HIGD1AP1-201ENST00000550979 275 ntBASIC4.07□□□□□ -1.76
MSX1P28360 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.07□□□□□ -1.76
MSX1P28360 AC133485.4-201ENST00000561835 220 ntBASIC4.07□□□□□ -1.76
MSX1P28360 AC138907.4-201ENST00000570107 226 ntBASIC4.07□□□□□ -1.76
MSX1P28360 MIR3138-201ENST00000585238 82 ntBASIC4.07□□□□□ -1.76
MSX1P28360 HMGN2P15-201ENST00000585707 270 ntBASIC4.07□□□□□ -1.76
MSX1P28360 VN1R85P-201ENST00000601587 426 ntBASIC4.07□□□□□ -1.76
MSX1P28360 AC091152.3-201ENST00000604227 325 ntBASIC4.07□□□□□ -1.76
MSX1P28360 AC005086.4-201ENST00000623065 213 ntBASIC4.07□□□□□ -1.76
MSX1P28360 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.07□□□□□ -1.76
MSX1P28360 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX1P28360 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.07□□□□□ -1.76
MSX1P28360 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX1P28360 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.07□□□□□ -1.76
MSX1P28360 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX1P28360 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
MSX1P28360 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX1P28360 AC011266.1-201ENST00000624119 3569 ntBASIC4.06□□□□□ -1.76
MSX1P28360 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.06□□□□□ -1.76
MSX1P28360 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.06□□□□□ -1.76
MSX1P28360 Y_RNA.120-201ENST00000363304 110 ntBASIC4.06□□□□□ -1.76
MSX1P28360 SNORA20B-201ENST00000384220 132 ntBASIC4.06□□□□□ -1.76
MSX1P28360 RNU1-44P-201ENST00000384453 163 ntBASIC4.06□□□□□ -1.76
MSX1P28360 MIR518C-201ENST00000384822 101 ntBASIC4.06□□□□□ -1.76
MSX1P28360 MIR659-201ENST00000384963 97 ntBASIC4.06□□□□□ -1.76
MSX1P28360 SNORA74C-2-201ENST00000411179 201 ntBASIC4.06□□□□□ -1.76
MSX1P28360 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.06□□□□□ -1.76
MSX1P28360 AC011998.1-201ENST00000433403 117 ntBASIC4.06□□□□□ -1.76
MSX1P28360 RPS3P1-201ENST00000456781 192 ntBASIC4.06□□□□□ -1.76
MSX1P28360 RN7SL810P-201ENST00000493031 276 ntBASIC4.06□□□□□ -1.76
MSX1P28360 AC146944.2-203ENST00000502493 354 ntBASIC4.06□□□□□ -1.76
MSX1P28360 AC139495.1-202ENST00000513164 354 ntBASIC4.06□□□□□ -1.76
MSX1P28360 SNORD19.2-201ENST00000516978 73 ntBASIC4.06□□□□□ -1.76
MSX1P28360 IGLVIV-65-201ENST00000517313 360 ntBASIC4.06□□□□□ -1.76
MSX1P28360 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.06□□□□□ -1.76
MSX1P28360 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.06□□□□□ -1.76
MSX1P28360 AC091979.2-201ENST00000607514 214 ntBASIC4.06□□□□□ -1.76
MSX1P28360 AC069200.1-201ENST00000609511 323 ntBASIC4.06□□□□□ -1.76
MSX1P28360 AC114781.5-201ENST00000615297 108 ntBASIC4.06□□□□□ -1.76
MSX1P28360 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.06□□□□□ -1.76
MSX1P28360 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSX1P28360 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX1P28360 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSX1P28360 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX1P28360 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX1P28360 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX1P28360 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX1P28360 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX1P28360 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.05□□□□□ -1.76
MSX1P28360 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
MSX1P28360 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX1P28360 MIR448-201ENST00000362131 111 ntBASIC4.05□□□□□ -1.76
MSX1P28360 SNORD114-19-201ENST00000363072 75 ntBASIC4.05□□□□□ -1.76
MSX1P28360 RNA5SP189-201ENST00000364920 115 ntBASIC4.05□□□□□ -1.76
MSX1P28360 RNA5SP151-201ENST00000365632 117 ntBASIC4.05□□□□□ -1.76
MSX1P28360 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.05□□□□□ -1.76
MSX1P28360 AL645939.1-201ENST00000453429 797 ntBASIC4.05□□□□□ -1.76
MSX1P28360 MIR2116-201ENST00000517221 80 ntBASIC4.05□□□□□ -1.76
MSX1P28360 AP003357.1-201ENST00000604497 148 ntBASIC4.05□□□□□ -1.76
MSX1P28360 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX1P28360 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.05□□□□□ -1.76
MSX1P28360 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
MSX1P28360 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSX1P28360 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
MSX1P28360 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSX1P28360 AC138915.1-201ENST00000565427 1685 ntBASIC4.04□□□□□ -1.76
MSX1P28360 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
MSX1P28360 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSX1P28360 U8.1-201ENST00000362843 134 ntBASIC4.04□□□□□ -1.76
MSX1P28360 RNA5SP22-201ENST00000365393 109 ntBASIC4.04□□□□□ -1.76
MSX1P28360 RNU6-1336P-201ENST00000383886 109 ntBASIC4.04□□□□□ -1.76
MSX1P28360 SNORD116-21-201ENST00000384507 92 ntBASIC4.04□□□□□ -1.76
MSX1P28360 SNORD96B-201ENST00000386148 79 ntBASIC4.04□□□□□ -1.76
MSX1P28360 RNA5SP239-201ENST00000410218 129 ntBASIC4.04□□□□□ -1.76
MSX1P28360 Y_RNA.630-201ENST00000411370 108 ntBASIC4.04□□□□□ -1.76
MSX1P28360 RPS29P17-201ENST00000430795 166 ntBASIC4.04□□□□□ -1.76
MSX1P28360 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.04□□□□□ -1.76
MSX1P28360 AL441985.1-201ENST00000457727 251 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 161.6 ms