Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.81□□□□□ -2.12
MMP1P03956 ELOCP5-201ENST00000604924 333 ntBASIC1.81□□□□□ -2.12
MMP1P03956 uc_338.5-201ENST00000611839 155 ntBASIC1.81□□□□□ -2.12
MMP1P03956 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.81□□□□□ -2.12
MMP1P03956 AC073534.2-201ENST00000620377 381 ntBASIC1.81□□□□□ -2.12
MMP1P03956 RMST_7.1-201ENST00000621935 268 ntBASIC1.81□□□□□ -2.12
MMP1P03956 AC139792.2-201ENST00000624218 587 ntBASIC1.81□□□□□ -2.12
MMP1P03956 AC091932.3-201ENST00000624223 323 ntBASIC1.81□□□□□ -2.12
MMP1P03956 RNU6-1322P-201ENST00000364309 107 ntBASIC1.8□□□□□ -2.12
MMP1P03956 RNU4-20P-201ENST00000365601 151 ntBASIC1.8□□□□□ -2.12
MMP1P03956 SNORA69-201ENST00000383895 132 ntBASIC1.8□□□□□ -2.12
MMP1P03956 RNU6-648P-201ENST00000410190 107 ntBASIC1.8□□□□□ -2.12
MMP1P03956 RNA5SP390-201ENST00000410191 113 ntBASIC1.8□□□□□ -2.12
MMP1P03956 RNU2-23P-201ENST00000410545 195 ntBASIC1.8□□□□□ -2.12
MMP1P03956 AC004965.1-201ENST00000413033 213 ntBASIC1.8□□□□□ -2.12
MMP1P03956 NDUFA5P4-201ENST00000436704 385 ntBASIC1.8□□□□□ -2.12
MMP1P03956 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.8□□□□□ -2.12
MMP1P03956 AMD1P1-201ENST00000457220 922 ntBASIC1.8□□□□□ -2.12
MMP1P03956 SNRPFP3-201ENST00000457792 225 ntBASIC1.8□□□□□ -2.12
MMP1P03956 RNU6-261P-201ENST00000459506 102 ntBASIC1.8□□□□□ -2.12
MMP1P03956 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.8□□□□□ -2.12
MMP1P03956 AC074344.1-201ENST00000512823 224 ntBASIC1.8□□□□□ -2.12
MMP1P03956 LRRC34P2-201ENST00000514850 553 ntBASIC1.8□□□□□ -2.12
MMP1P03956 RNU6-506P-201ENST00000516553 94 ntBASIC1.8□□□□□ -2.12
MMP1P03956 Y_RNA.704-201ENST00000516851 102 ntBASIC1.8□□□□□ -2.12
MMP1P03956 AC016957.1-201ENST00000534895 309 ntBASIC1.8□□□□□ -2.12
MMP1P03956 AL118558.2-201ENST00000556294 238 ntBASIC1.8□□□□□ -2.12
MMP1P03956 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.8□□□□□ -2.12
MMP1P03956 AC026271.5-201ENST00000577873 130 ntBASIC1.8□□□□□ -2.12
MMP1P03956 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.8□□□□□ -2.12
MMP1P03956 AC090897.2-201ENST00000581715 130 ntBASIC1.8□□□□□ -2.12
MMP1P03956 RNU6-655P-201ENST00000362858 107 ntBASIC1.79□□□□□ -2.12
MMP1P03956 RNU6-1085P-201ENST00000363576 107 ntBASIC1.79□□□□□ -2.12
MMP1P03956 Y_RNA.324-201ENST00000365165 102 ntBASIC1.79□□□□□ -2.12
MMP1P03956 Y_RNA.399-201ENST00000383955 105 ntBASIC1.79□□□□□ -2.12
MMP1P03956 SNORA40.19-201ENST00000390846 128 ntBASIC1.79□□□□□ -2.12
MMP1P03956 AC074117.2-201ENST00000417130 397 ntBASIC1.79□□□□□ -2.12
MMP1P03956 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.79□□□□□ -2.12
MMP1P03956 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.79□□□□□ -2.12
MMP1P03956 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.79□□□□□ -2.12
MMP1P03956 PRPS1P1-201ENST00000445305 876 ntBASIC1.79□□□□□ -2.12
MMP1P03956 RNA5SP233-201ENST00000459153 113 ntBASIC1.79□□□□□ -2.12
MMP1P03956 snoU13.14-201ENST00000459372 104 ntBASIC1.79□□□□□ -2.12
MMP1P03956 AC087884.1-201ENST00000469738 328 ntBASIC1.79□□□□□ -2.12
MMP1P03956 AL121594.1-201ENST00000475906 575 ntBASIC1.79□□□□□ -2.12
MMP1P03956 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.79□□□□□ -2.12
MMP1P03956 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.79□□□□□ -2.12
MMP1P03956 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.79□□□□□ -2.12
MMP1P03956 TPRKBP2-201ENST00000565969 475 ntBASIC1.79□□□□□ -2.12
MMP1P03956 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.79□□□□□ -2.12
MMP1P03956 AC008749.1-201ENST00000597650 306 ntBASIC1.79□□□□□ -2.12
MMP1P03956 SNRPGP17-201ENST00000603780 214 ntBASIC1.79□□□□□ -2.12
MMP1P03956 AC123912.5-201ENST00000605470 343 ntBASIC1.79□□□□□ -2.12
MMP1P03956 AC002044.1-201ENST00000606707 158 ntBASIC1.79□□□□□ -2.12
MMP1P03956 Z69720.2-201ENST00000624755 279 ntBASIC1.79□□□□□ -2.12
MMP1P03956 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
MMP1P03956 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
MMP1P03956 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.78□□□□□ -2.12
MMP1P03956 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
MMP1P03956 AL391987.6-201ENST00000305671 199 ntBASIC1.78□□□□□ -2.12
MMP1P03956 RNU6-1210P-201ENST00000363775 107 ntBASIC1.78□□□□□ -2.12
MMP1P03956 U3.13-201ENST00000364804 214 ntBASIC1.78□□□□□ -2.12
MMP1P03956 RNU6-392P-201ENST00000364926 101 ntBASIC1.78□□□□□ -2.12
MMP1P03956 RNU6-38P-201ENST00000384085 107 ntBASIC1.78□□□□□ -2.12
MMP1P03956 RNU6-483P-201ENST00000384088 108 ntBASIC1.78□□□□□ -2.12
MMP1P03956 RNU6-434P-201ENST00000384376 107 ntBASIC1.78□□□□□ -2.12
MMP1P03956 Y_RNA.554-201ENST00000384672 102 ntBASIC1.78□□□□□ -2.12
MMP1P03956 AL512604.1-201ENST00000404812 257 ntBASIC1.78□□□□□ -2.12
MMP1P03956 RAP1BP3-201ENST00000407180 549 ntBASIC1.78□□□□□ -2.12
MMP1P03956 RNU6-908P-201ENST00000410160 94 ntBASIC1.78□□□□□ -2.12
MMP1P03956 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.78□□□□□ -2.12
MMP1P03956 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.78□□□□□ -2.12
MMP1P03956 TIMM9P3-201ENST00000428659 274 ntBASIC1.78□□□□□ -2.12
MMP1P03956 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.78□□□□□ -2.12
MMP1P03956 AC245517.4-201ENST00000448601 281 ntBASIC1.78□□□□□ -2.12
MMP1P03956 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.78□□□□□ -2.12
MMP1P03956 RNU6-333P-201ENST00000459117 107 ntBASIC1.78□□□□□ -2.12
MMP1P03956 HMGB1P35-201ENST00000503360 598 ntBASIC1.78□□□□□ -2.12
MMP1P03956 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.78□□□□□ -2.12
MMP1P03956 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.78□□□□□ -2.12
MMP1P03956 AC090115.3-201ENST00000553218 849 ntBASIC1.78□□□□□ -2.12
MMP1P03956 AL512360.1-201ENST00000555346 234 ntBASIC1.78□□□□□ -2.12
MMP1P03956 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.78□□□□□ -2.12
MMP1P03956 HMGB1P33-201ENST00000563485 527 ntBASIC1.78□□□□□ -2.12
MMP1P03956 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.78□□□□□ -2.12
MMP1P03956 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
MMP1P03956 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.78□□□□□ -2.12
MMP1P03956 uc_338.34-201ENST00000617467 174 ntBASIC1.78□□□□□ -2.12
MMP1P03956 SDR42E1P4-201ENST00000620894 481 ntBASIC1.78□□□□□ -2.12
MMP1P03956 Y_RNA.40-201ENST00000362645 93 ntBASIC1.77□□□□□ -2.13
MMP1P03956 RNU6-78P-201ENST00000362897 107 ntBASIC1.77□□□□□ -2.13
MMP1P03956 Y_RNA.167-201ENST00000363735 109 ntBASIC1.77□□□□□ -2.13
MMP1P03956 Y_RNA.327-201ENST00000365201 102 ntBASIC1.77□□□□□ -2.13
MMP1P03956 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
MMP1P03956 Y_RNA.481-201ENST00000384373 102 ntBASIC1.77□□□□□ -2.13
MMP1P03956 RNU6-1274P-201ENST00000384557 107 ntBASIC1.77□□□□□ -2.13
MMP1P03956 MIR518A2-201ENST00000384966 87 ntBASIC1.77□□□□□ -2.13
MMP1P03956 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
MMP1P03956 CBX3P9-201ENST00000402326 552 ntBASIC1.77□□□□□ -2.13
MMP1P03956 MIR1323-201ENST00000408090 73 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms