Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.33□□□□□ -2.2
LSM1O15116 U3.9-201ENST00000363823 204 ntBASIC1.32□□□□□ -2.2
LSM1O15116 SNORD1A-201ENST00000364968 72 ntBASIC1.32□□□□□ -2.2
LSM1O15116 RNU6-393P-201ENST00000384475 107 ntBASIC1.32□□□□□ -2.2
LSM1O15116 RNU6-939P-201ENST00000384634 107 ntBASIC1.32□□□□□ -2.2
LSM1O15116 MIR1267-201ENST00000408723 78 ntBASIC1.32□□□□□ -2.2
LSM1O15116 HIGD1AP15-201ENST00000416198 280 ntBASIC1.32□□□□□ -2.2
LSM1O15116 RPL21P111-201ENST00000418453 477 ntBASIC1.32□□□□□ -2.2
LSM1O15116 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.32□□□□□ -2.2
LSM1O15116 CYCSP46-201ENST00000423569 204 ntBASIC1.32□□□□□ -2.2
LSM1O15116 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC1.32□□□□□ -2.2
LSM1O15116 RPS27P16-201ENST00000425758 201 ntBASIC1.32□□□□□ -2.2
LSM1O15116 AL121601.2-201ENST00000438019 707 ntBASIC1.32□□□□□ -2.2
LSM1O15116 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
LSM1O15116 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.32□□□□□ -2.2
LSM1O15116 MTCO3P28-201ENST00000513351 515 ntBASIC1.32□□□□□ -2.2
LSM1O15116 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.32□□□□□ -2.2
LSM1O15116 RNU6-1098P-201ENST00000516772 96 ntBASIC1.32□□□□□ -2.2
LSM1O15116 RNA5SP503-201ENST00000517047 117 ntBASIC1.32□□□□□ -2.2
LSM1O15116 HSPE1P4-201ENST00000550617 308 ntBASIC1.32□□□□□ -2.2
LSM1O15116 ZNF321P-202ENST00000550843 495 ntBASIC1.32□□□□□ -2.2
LSM1O15116 AC012414.6-201ENST00000568241 401 ntBASIC1.32□□□□□ -2.2
LSM1O15116 AC005668.1-201ENST00000571142 476 ntBASIC1.32□□□□□ -2.2
LSM1O15116 AC006566.1-201ENST00000608943 513 ntBASIC1.32□□□□□ -2.2
LSM1O15116 AP001506.1-201ENST00000615444 211 ntBASIC1.32□□□□□ -2.2
LSM1O15116 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
LSM1O15116 RNU6-414P-201ENST00000363705 104 ntBASIC1.31□□□□□ -2.2
LSM1O15116 SNORA63D-201ENST00000364359 132 ntBASIC1.31□□□□□ -2.2
LSM1O15116 RNU4-48P-201ENST00000365559 182 ntBASIC1.31□□□□□ -2.2
LSM1O15116 RNU5A-2P-201ENST00000384337 116 ntBASIC1.31□□□□□ -2.2
LSM1O15116 RNU6-297P-201ENST00000384636 107 ntBASIC1.31□□□□□ -2.2
LSM1O15116 MIR758-201ENST00000390227 88 ntBASIC1.31□□□□□ -2.2
LSM1O15116 RNU6-174P-201ENST00000410406 106 ntBASIC1.31□□□□□ -2.2
LSM1O15116 MTCO1P21-201ENST00000416634 589 ntBASIC1.31□□□□□ -2.2
LSM1O15116 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.31□□□□□ -2.2
LSM1O15116 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.31□□□□□ -2.2
LSM1O15116 ISCA1P6-201ENST00000427740 390 ntBASIC1.31□□□□□ -2.2
LSM1O15116 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.31□□□□□ -2.2
LSM1O15116 RPL31P35-201ENST00000431058 377 ntBASIC1.31□□□□□ -2.2
LSM1O15116 HSPE1P9-201ENST00000440046 311 ntBASIC1.31□□□□□ -2.2
LSM1O15116 AC027119.1-201ENST00000440877 241 ntBASIC1.31□□□□□ -2.2
LSM1O15116 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.31□□□□□ -2.2
LSM1O15116 PRPS1P1-201ENST00000445305 876 ntBASIC1.31□□□□□ -2.2
LSM1O15116 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.31□□□□□ -2.2
LSM1O15116 GMFBP1-201ENST00000467831 427 ntBASIC1.31□□□□□ -2.2
LSM1O15116 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC1.31□□□□□ -2.2
LSM1O15116 RN7SKP179-201ENST00000516126 217 ntBASIC1.31□□□□□ -2.2
LSM1O15116 SNORD60.2-201ENST00000516883 86 ntBASIC1.31□□□□□ -2.2
LSM1O15116 RNU6-232P-201ENST00000517144 64 ntBASIC1.31□□□□□ -2.2
LSM1O15116 EIF4A1P12-201ENST00000551910 141 ntBASIC1.31□□□□□ -2.2
LSM1O15116 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC1.31□□□□□ -2.2
LSM1O15116 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.31□□□□□ -2.2
LSM1O15116 AC068338.1-201ENST00000565567 176 ntBASIC1.31□□□□□ -2.2
LSM1O15116 AC091805.2-201ENST00000603848 235 ntBASIC1.31□□□□□ -2.2
LSM1O15116 AC009994.1-201ENST00000606889 253 ntBASIC1.31□□□□□ -2.2
LSM1O15116 MIR7843-201ENST00000622274 79 ntBASIC1.31□□□□□ -2.2
LSM1O15116 SNORA43.4-201ENST00000629559 138 ntBASIC1.31□□□□□ -2.2
LSM1O15116 MTND4P14-201ENST00000435799 1354 ntBASIC1.31□□□□□ -2.2
LSM1O15116 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
LSM1O15116 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.3□□□□□ -2.2
LSM1O15116 RNU4-56P-201ENST00000364700 142 ntBASIC1.3□□□□□ -2.2
LSM1O15116 RNU6-378P-201ENST00000384324 107 ntBASIC1.3□□□□□ -2.2
LSM1O15116 RNU6-434P-201ENST00000384376 107 ntBASIC1.3□□□□□ -2.2
LSM1O15116 Y_RNA.560-201ENST00000384689 102 ntBASIC1.3□□□□□ -2.2
LSM1O15116 MIR520A-201ENST00000384862 85 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AL117342.1-201ENST00000404861 406 ntBASIC1.3□□□□□ -2.2
LSM1O15116 SNORA11.2-201ENST00000408318 127 ntBASIC1.3□□□□□ -2.2
LSM1O15116 RNU6-248P-201ENST00000410720 107 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.3□□□□□ -2.2
LSM1O15116 OR2AQ1P-201ENST00000451972 200 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AL033528.1-201ENST00000453780 140 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.3□□□□□ -2.2
LSM1O15116 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.3□□□□□ -2.2
LSM1O15116 RPS29P15-201ENST00000458329 171 ntBASIC1.3□□□□□ -2.2
LSM1O15116 SNORD42A-201ENST00000459584 64 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC010531.2-201ENST00000465012 153 ntBASIC1.3□□□□□ -2.2
LSM1O15116 RPL9P9-202ENST00000466501 579 ntBASIC1.3□□□□□ -2.2
LSM1O15116 HMGN2P9-201ENST00000476875 229 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC091874.1-201ENST00000511402 339 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.3□□□□□ -2.2
LSM1O15116 SUMO2P18-201ENST00000518873 252 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.3□□□□□ -2.2
LSM1O15116 AGGF1P4-201ENST00000568249 801 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC107304.1-201ENST00000604229 296 ntBASIC1.3□□□□□ -2.2
LSM1O15116 Z98751.3-201ENST00000604447 521 ntBASIC1.3□□□□□ -2.2
LSM1O15116 CTHRC1P1-201ENST00000605383 469 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC002044.1-201ENST00000606707 158 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC008250.2-201ENST00000615261 205 ntBASIC1.3□□□□□ -2.2
LSM1O15116 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.3□□□□□ -2.2
LSM1O15116 AC095038.3-201ENST00000634439 195 ntBASIC1.3□□□□□ -2.2
LSM1O15116 ZNF72P-201ENST00000425869 1908 ntBASIC1.3□□□□□ -2.2
LSM1O15116 RNU4-21P-201ENST00000362802 126 ntBASIC1.29□□□□□ -2.2
LSM1O15116 Y_RNA.255-201ENST00000364581 97 ntBASIC1.29□□□□□ -2.2
LSM1O15116 Y_RNA.399-201ENST00000383955 105 ntBASIC1.29□□□□□ -2.2
LSM1O15116 MIR548B-201ENST00000385247 97 ntBASIC1.29□□□□□ -2.2
LSM1O15116 SNORD70.1-201ENST00000391007 85 ntBASIC1.29□□□□□ -2.2
LSM1O15116 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC1.29□□□□□ -2.2
LSM1O15116 AL591806.2-201ENST00000433122 173 ntBASIC1.29□□□□□ -2.2
LSM1O15116 RPS29P29-201ENST00000456396 171 ntBASIC1.29□□□□□ -2.2
LSM1O15116 RNU7-125P-201ENST00000458760 62 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 185.3 ms