Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.76■□□□□ 0.43
CLIP4Q8N3C7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.76■□□□□ 0.43
CLIP4Q8N3C7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CLIP4Q8N3C7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP4Q8N3C7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP4Q8N3C7 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP4Q8N3C7 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
CLIP4Q8N3C7 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 AP000997.3-201ENST00000623333 2250 ntBASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 AC012313.1-201ENST00000593393 3059 ntBASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CLIP4Q8N3C7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 AL138781.2-201ENST00000617896 1843 ntBASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CLIP4Q8N3C7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 AP003097.1-201ENST00000530657 1135 ntBASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 PRKY-204ENST00000533551 1019 ntBASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
CLIP4Q8N3C7 AC233263.1-201ENST00000578059 224 ntBASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms