Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A1P12109 AC104417.2-201ENST00000562989 1793 ntBASIC20.94■□□□□ 0.94
COL6A1P12109 LINC00167-201ENST00000530583 1419 ntBASIC20.94■□□□□ 0.94
COL6A1P12109 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
COL6A1P12109 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A1P12109 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A1P12109 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.94■□□□□ 0.94
COL6A1P12109 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL6A1P12109 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.93■□□□□ 0.94
COL6A1P12109 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
COL6A1P12109 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.93■□□□□ 0.94
COL6A1P12109 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.93■□□□□ 0.94
COL6A1P12109 MCCD1P1-208ENST00000445732 328 ntBASIC20.93■□□□□ 0.94
COL6A1P12109 SAPCD2P3-201ENST00000455031 850 ntBASIC20.93■□□□□ 0.94
COL6A1P12109 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 SLC25A1P1-201ENST00000528351 927 ntBASIC20.93■□□□□ 0.94
COL6A1P12109 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
COL6A1P12109 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL6A1P12109 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.93■□□□□ 0.94
COL6A1P12109 AC099336.1-202ENST00000602961 463 ntBASIC20.93■□□□□ 0.94
COL6A1P12109 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.93■□□□□ 0.94
COL6A1P12109 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL6A1P12109 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
COL6A1P12109 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.92■□□□□ 0.94
COL6A1P12109 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.92■□□□□ 0.94
COL6A1P12109 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
COL6A1P12109 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.92■□□□□ 0.94
COL6A1P12109 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL6A1P12109 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A1P12109 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A1P12109 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A1P12109 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.92■□□□□ 0.94
COL6A1P12109 AF238378.1-201ENST00000526806 358 ntBASIC20.92■□□□□ 0.94
COL6A1P12109 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.92■□□□□ 0.94
COL6A1P12109 AP001005.1-201ENST00000571755 1248 ntBASIC20.92■□□□□ 0.94
COL6A1P12109 AC005332.3-201ENST00000589904 676 ntBASIC20.92■□□□□ 0.94
COL6A1P12109 AL390719.2-201ENST00000606993 987 ntBASIC20.92■□□□□ 0.94
COL6A1P12109 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.92■□□□□ 0.94
COL6A1P12109 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL6A1P12109 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.92■□□□□ 0.94
COL6A1P12109 AL162377.1-201ENST00000618844 1793 ntBASIC20.92■□□□□ 0.94
COL6A1P12109 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL6A1P12109 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A1P12109 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.91■□□□□ 0.94
COL6A1P12109 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A1P12109 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.91■□□□□ 0.94
COL6A1P12109 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A1P12109 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.91■□□□□ 0.94
COL6A1P12109 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.91■□□□□ 0.94
COL6A1P12109 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.91■□□□□ 0.94
COL6A1P12109 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COL6A1P12109 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.91■□□□□ 0.94
COL6A1P12109 AP005212.1-201ENST00000581547 1997 ntBASIC20.91■□□□□ 0.94
COL6A1P12109 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A1P12109 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.91■□□□□ 0.94
COL6A1P12109 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.91■□□□□ 0.94
COL6A1P12109 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.91■□□□□ 0.94
COL6A1P12109 AC064862.7-201ENST00000604520 867 ntBASIC20.91■□□□□ 0.94
COL6A1P12109 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A1P12109 TP73-AS1-207ENST00000624167 988 ntBASIC20.91■□□□□ 0.94
COL6A1P12109 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A1P12109 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL6A1P12109 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A1P12109 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.9■□□□□ 0.94
COL6A1P12109 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A1P12109 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.9■□□□□ 0.94
COL6A1P12109 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
COL6A1P12109 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.9■□□□□ 0.94
COL6A1P12109 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.9■□□□□ 0.94
COL6A1P12109 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
COL6A1P12109 IGHV3-41-201ENST00000613121 348 ntBASIC20.9■□□□□ 0.94
COL6A1P12109 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
COL6A1P12109 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A1P12109 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL6A1P12109 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
COL6A1P12109 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL6A1P12109 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.89■□□□□ 0.93
COL6A1P12109 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
COL6A1P12109 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
COL6A1P12109 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.89■□□□□ 0.93
COL6A1P12109 Z69720.1-201ENST00000601483 472 ntBASIC20.89■□□□□ 0.93
COL6A1P12109 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
COL6A1P12109 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL6A1P12109 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
COL6A1P12109 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms