Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.24□□□□□ -1.73
USP3Q9Y6I4 RPL23AP70-201ENST00000483361 460 ntBASIC4.24□□□□□ -1.73
USP3Q9Y6I4 RN7SL271P-201ENST00000487601 295 ntBASIC4.24□□□□□ -1.73
USP3Q9Y6I4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.24□□□□□ -1.73
USP3Q9Y6I4 RNA5SP154-201ENST00000516193 111 ntBASIC4.24□□□□□ -1.73
USP3Q9Y6I4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.24□□□□□ -1.73
USP3Q9Y6I4 RPS15AP11-201ENST00000594193 385 ntBASIC4.24□□□□□ -1.73
USP3Q9Y6I4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
USP3Q9Y6I4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP3Q9Y6I4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
USP3Q9Y6I4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.23□□□□□ -1.73
USP3Q9Y6I4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.23□□□□□ -1.73
USP3Q9Y6I4 U3.8-201ENST00000363675 217 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 U8.12-201ENST00000384701 133 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 MIR708-201ENST00000390708 88 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
USP3Q9Y6I4 RPL23AP82-202ENST00000427528 469 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 TBCAP1-201ENST00000436520 327 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 AL135790.2-201ENST00000437701 267 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 AL645939.1-201ENST00000453429 797 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 AC146507.2-201ENST00000460608 476 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
USP3Q9Y6I4 AC025281.1-201ENST00000567026 265 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.23□□□□□ -1.73
USP3Q9Y6I4 AC012493.2-201ENST00000595083 291 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 VN1R85P-201ENST00000601587 426 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 AC024220.1-201ENST00000603675 484 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 RPL17P51-201ENST00000605218 238 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 AC015813.4-201ENST00000610469 179 ntBASIC4.23□□□□□ -1.73
USP3Q9Y6I4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.23□□□□□ -1.73
USP3Q9Y6I4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.23□□□□□ -1.73
USP3Q9Y6I4 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 RNU1-75P-201ENST00000347264 129 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 SNORD35B-201ENST00000363660 87 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.341-201ENST00000365341 102 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.361-201ENST00000365515 120 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.420-201ENST00000384043 110 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 RNU6-1228P-201ENST00000391014 107 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 RNU6-855P-201ENST00000410395 104 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 AC004386.2-201ENST00000441858 148 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 SRIP1-201ENST00000489235 288 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 RPS27P26-201ENST00000494583 239 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 RNU1-61P-201ENST00000516107 151 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 YPEL5P3-201ENST00000547227 352 ntBASIC4.22□□□□□ -1.73
USP3Q9Y6I4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.22□□□□□ -1.73
USP3Q9Y6I4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.73
USP3Q9Y6I4 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 SNORD114-19-201ENST00000363072 75 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 RNU6-1205P-201ENST00000363625 106 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 AP002088.1-201ENST00000382740 395 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 SNORD37.2-201ENST00000391075 66 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 AL691449.1-201ENST00000426570 421 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 RNU6-1211P-201ENST00000459179 105 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 RPL32P34-201ENST00000486380 400 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 RNU6-1007P-201ENST00000516586 107 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 LARP7P3-201ENST00000579888 337 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 MIR5006-201ENST00000583027 110 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 AC091152.3-201ENST00000604227 325 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 AC018692.3-201ENST00000623929 123 ntBASIC4.21□□□□□ -1.74
USP3Q9Y6I4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.21□□□□□ -1.74
USP3Q9Y6I4 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 SNORD114-7-201ENST00000362520 77 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 SNORD74.4-201ENST00000364129 80 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 RNU6-1325P-201ENST00000364905 105 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 RNU6-643P-201ENST00000384018 107 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 RNA5SP306-201ENST00000411087 107 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 AL139281.1-201ENST00000422120 335 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 AC027124.2-201ENST00000428249 105 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 AL121914.1-201ENST00000450188 156 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 RPL31P61-201ENST00000496160 376 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.2□□□□□ -1.74
USP3Q9Y6I4 YWHAEP4-201ENST00000505390 198 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 RN7SKP179-201ENST00000516126 217 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 RN7SKP289-201ENST00000517244 295 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 AC026241.1-201ENST00000517873 2142 ntBASIC4.2□□□□□ -1.74
USP3Q9Y6I4 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms