Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 ZNF826P-207ENST00000622273 1910 ntBASIC4.32□□□□□ -1.72
ATG3Q9NT62 AC068647.1-201ENST00000489539 2265 ntBASIC4.32□□□□□ -1.72
ATG3Q9NT62 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
ATG3Q9NT62 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
ATG3Q9NT62 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
ATG3Q9NT62 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
ATG3Q9NT62 CEP170P1-201ENST00000502249 4587 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
ATG3Q9NT62 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
ATG3Q9NT62 RNU6-227P-201ENST00000362865 103 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 RNU6-1289P-201ENST00000384431 106 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 Y_RNA.568-201ENST00000384742 113 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 MIR301A-201ENST00000385261 86 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 Y_RNA.580-201ENST00000391004 95 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 COTL1P1-201ENST00000422309 375 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC4.31□□□□□ -1.72
ATG3Q9NT62 HMGN2P7-201ENST00000456186 273 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 AC087588.1-201ENST00000462203 316 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 AC091959.1-201ENST00000495857 238 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.31□□□□□ -1.72
ATG3Q9NT62 SNORA70.14-201ENST00000516205 110 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.31□□□□□ -1.72
ATG3Q9NT62 AC084851.1-201ENST00000529105 249 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.31□□□□□ -1.72
ATG3Q9NT62 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 AC099506.2-201ENST00000623074 221 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 MIR4275-201ENST00000636486 87 ntBASIC4.31□□□□□ -1.72
ATG3Q9NT62 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
ATG3Q9NT62 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
ATG3Q9NT62 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
ATG3Q9NT62 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
ATG3Q9NT62 MIR422A-201ENST00000362286 90 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 RNU6-818P-201ENST00000364837 108 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 SNORA44-201ENST00000384584 132 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 MIR186-201ENST00000384988 86 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 Y_RNA.586-201ENST00000391146 98 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.3□□□□□ -1.72
ATG3Q9NT62 AL162725.1-201ENST00000435405 301 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 AC016700.2-201ENST00000446011 156 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 SNORD2.1-201ENST00000458762 69 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 SNRPGP3-201ENST00000469405 227 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 ATP5F1P5-201ENST00000526403 760 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
ATG3Q9NT62 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC4.3□□□□□ -1.72
ATG3Q9NT62 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.3□□□□□ -1.72
ATG3Q9NT62 MIR3186-201ENST00000577404 85 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 MIR4423-201ENST00000580922 80 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 AC008121.1-201ENST00000603244 268 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 AL161798.1-201ENST00000604630 131 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.3□□□□□ -1.72
ATG3Q9NT62 AC091895.1-201ENST00000624494 256 ntBASIC4.3□□□□□ -1.72
ATG3Q9NT62 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.3□□□□□ -1.72
ATG3Q9NT62 AL079305.1-201ENST00000623159 3008 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
ATG3Q9NT62 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
ATG3Q9NT62 AF127577.6-201ENST00000623352 2191 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 AC118273.1-201ENST00000525324 3006 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 UBE2WP1-201ENST00000362030 340 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 MIR412-201ENST00000362142 91 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 RNU6-1167P-201ENST00000363227 94 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 Y_RNA.272-201ENST00000364696 102 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC4.29□□□□□ -1.72
ATG3Q9NT62 RNA5SP213-201ENST00000391031 106 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 Y_RNA.629-201ENST00000411368 105 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 AL353705.1-201ENST00000433468 480 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 SSXP4-201ENST00000451349 245 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.29□□□□□ -1.72
ATG3Q9NT62 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.29□□□□□ -1.72
ATG3Q9NT62 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC4.29□□□□□ -1.72
ATG3Q9NT62 RN7SKP272-201ENST00000516988 232 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.29□□□□□ -1.72
ATG3Q9NT62 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 RPL23AP88-201ENST00000605759 454 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.29□□□□□ -1.72
ATG3Q9NT62 RNVU1-4-201ENST00000612985 164 ntBASIC4.29□□□□□ -1.72
ATG3Q9NT62 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
ATG3Q9NT62 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.29□□□□□ -1.72
ATG3Q9NT62 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.29□□□□□ -1.72
ATG3Q9NT62 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
ATG3Q9NT62 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
ATG3Q9NT62 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.28□□□□□ -1.72
ATG3Q9NT62 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.28□□□□□ -1.72
ATG3Q9NT62 AC100821.1-201ENST00000523153 2479 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 SNORA25.1-201ENST00000362326 128 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 RNU6-215P-201ENST00000365169 102 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 RNU6-658P-201ENST00000384606 106 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
ATG3Q9NT62 AL513331.1-201ENST00000411908 397 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 YPEL5P1-201ENST00000419731 367 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 AC009237.7-201ENST00000447357 229 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 snoU13.30-201ENST00000458951 104 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 AC097462.2-201ENST00000504623 481 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC4.28□□□□□ -1.72
ATG3Q9NT62 RNA5SP272-201ENST00000516095 111 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 SNORA27.4-201ENST00000516650 95 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 RNU6-143P-201ENST00000516942 93 ntBASIC4.28□□□□□ -1.72
ATG3Q9NT62 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 143.9 ms