Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU2-53P-201ENST00000516257 147 ntBASIC3.23□□□□□ -1.89
NUP88Q99567 AC109329.1-201ENST00000518744 317 ntBASIC3.23□□□□□ -1.89
NUP88Q99567 MRPS36P4-201ENST00000534436 298 ntBASIC3.23□□□□□ -1.89
NUP88Q99567 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.23□□□□□ -1.89
NUP88Q99567 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.23□□□□□ -1.89
NUP88Q99567 AL161431.1-201ENST00000618966 4205 ntBASIC3.23□□□□□ -1.89
NUP88Q99567 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NUP88Q99567 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.22□□□□□ -1.89
NUP88Q99567 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.22□□□□□ -1.89
NUP88Q99567 ZNF299P-201ENST00000406845 1804 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 SNORD50.1-201ENST00000362987 71 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 Y_RNA.187-201ENST00000363918 113 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 SNORA68.1-201ENST00000364537 132 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 MIR512-1-201ENST00000384913 84 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 MIR181B1-201ENST00000385240 110 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 SNORA75.6-201ENST00000391318 127 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 RN7SKP61-201ENST00000410642 295 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 RN7SKP123-201ENST00000410732 291 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.22□□□□□ -1.89
NUP88Q99567 AC063976.3-201ENST00000426849 329 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 AC078809.1-201ENST00000427601 140 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 ARL5AP4-201ENST00000430731 512 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.22□□□□□ -1.89
NUP88Q99567 AL513124.1-201ENST00000450410 614 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 AC027575.1-201ENST00000481064 460 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 AIG1P1-201ENST00000503376 148 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.22□□□□□ -1.89
NUP88Q99567 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.22□□□□□ -1.89
NUP88Q99567 AC090971.5-201ENST00000621102 293 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 MIR7157-201ENST00000635801 60 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 SNORD98-201ENST00000636377 67 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 FAM35CP-201ENST00000554755 2470 ntBASIC3.22□□□□□ -1.89
NUP88Q99567 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.22□□□□□ -1.89
NUP88Q99567 AC010329.5-201ENST00000623497 2174 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.21□□□□□ -1.9
NUP88Q99567 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
NUP88Q99567 Y_RNA.40-201ENST00000362645 93 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 RNU6-1210P-201ENST00000363775 107 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 MIR181A2-201ENST00000384863 110 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 AL356057.3-201ENST00000402607 340 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.21□□□□□ -1.9
NUP88Q99567 ELOCP24-201ENST00000456370 334 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 AC003982.1-202ENST00000469928 248 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 AC090525.1-201ENST00000479116 478 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.21□□□□□ -1.9
NUP88Q99567 AC022493.2-201ENST00000506122 481 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.21□□□□□ -1.9
NUP88Q99567 AC021231.3-201ENST00000558497 370 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.21□□□□□ -1.9
NUP88Q99567 AL158827.2-201ENST00000602494 330 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 AC090517.3-201ENST00000625170 141 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 AL691447.3-201ENST00000635020 330 ntBASIC3.21□□□□□ -1.9
NUP88Q99567 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.21□□□□□ -1.9
NUP88Q99567 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 RNU6-1285P-201ENST00000363480 105 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 RNU6-694P-201ENST00000364071 147 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 Y_RNA.813-201ENST00000364639 102 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 RNU6-1286P-201ENST00000383871 107 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 SNORA36A-201ENST00000384221 132 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 MIR196B-201ENST00000384852 84 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 RNA5SP494-201ENST00000410653 129 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 RNU6-1328P-201ENST00000410938 106 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 RPS29P6-201ENST00000438196 145 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 AC079354.2-201ENST00000453523 154 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 RPL23AP70-201ENST00000483361 460 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 AC068781.1-201ENST00000488231 618 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 AC023141.11-201ENST00000508864 202 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 SCARNA3-201ENST00000517097 143 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 AC027176.1-201ENST00000560204 514 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 MIR3124-201ENST00000582636 67 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 AC060766.3-201ENST00000591442 263 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.2□□□□□ -1.9
NUP88Q99567 AC080128.1-201ENST00000474389 1917 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 AP000560.1-201ENST00000624150 1937 ntBASIC3.2□□□□□ -1.9
NUP88Q99567 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NUP88Q99567 RNY1P16-201ENST00000363063 111 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 SNORD88.1-201ENST00000408684 91 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 CYCSP48-201ENST00000417124 323 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 AL590556.1-201ENST00000423231 483 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 EIF4EP4-201ENST00000424916 578 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 MTCO2P12-201ENST00000427426 682 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 RPL30P4-201ENST00000429309 333 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.19□□□□□ -1.9
NUP88Q99567 AL121594.1-201ENST00000475906 575 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 RPL30P1-201ENST00000488676 339 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.19□□□□□ -1.9
NUP88Q99567 CKS1BP2-201ENST00000497342 240 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 AC022447.4-201ENST00000504053 364 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 AC021146.2-201ENST00000504736 556 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 RNU5F-2P-201ENST00000516066 82 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 SNORA31.16-201ENST00000516773 139 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 RN7SKP282-201ENST00000516824 299 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NUP88Q99567 AC093249.1-201ENST00000567049 203 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.19□□□□□ -1.9
NUP88Q99567 MIR3136-201ENST00000583498 78 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 ZNF861P-201ENST00000588126 639 ntBASIC3.19□□□□□ -1.9
NUP88Q99567 RPL30P11-203ENST00000598995 310 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms